Your message dated Fri, 07 Jul 2017 10:04:27 +0000 with message-id <e1dtq7f-0009pv...@fasolo.debian.org> and subject line Bug#867549: fixed in pysal 1.13.0-5 has caused the Debian Bug report #867549, regarding pysal FTBFS with python 3.6 as supported version to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 867549: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=867549 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: pysal Version: 1.13.0-4 Severity: serious Tags: buster sid https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/pysal.html ... I: pybuild base:184: cd /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose --exclude test_DistanceBand_arc --exclude-dir=pysal/contrib --exclude-dir pysal/network Trying `CDLL(libgeos_c.so.1)` Library path: 'libgeos_c.so.1' DLL: <CDLL 'libgeos_c.so.1', handle 374a360 at 0x7fc9b3402f98> Trying `CDLL(libc.so.6)` Library path: 'libc.so.6' DLL: <CDLL 'libc.so.6', handle 7fc9c85c14e0 at 0x7fc9bb88bc18> .........../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/cg/segmentLocator.py:117: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if self._hashKeys == None: ...............................................................................................................................................................S....../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:189: UserWarning: There are 3 disconnected observations warnings.warn("There are %d disconnected observations" % ni) /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:190: UserWarning: Island ids: 6, 8, 11 warnings.warn("Island ids: %s" % ', '.join(str(island) for island in self.islands)) ........./build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/core/IOHandlers/gwt.py:148: RuntimeWarning: DBF relating to GWT was not found, proceeding with unordered string ids. warn("DBF relating to GWT was not found, proceeding with unordered string ids.", RuntimeWarning) ......................../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:189: UserWarning: There are 7 disconnected observations warnings.warn("There are %d disconnected observations" % ni) /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:190: UserWarning: Island ids: 5, 9, 10, 11, 12, 14, 15 warnings.warn("Island ids: %s" % ', '.join(str(island) for island in self.islands)) ........../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/core/Tables.py:215: UserWarning: Encountered the following error in attempting to read the shapefile /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/examples/us_income/usjoin.shp. Proceeding with read, but the error will be reproduced below: [Errno 2] No such file or directory: '/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/examples/us_income/usjoin.shp' ' {}'.format(self.dataPath[:-3]+'shp', e)) ...............................................................................FF..................................../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/moran.py:876: RuntimeWarning: invalid value encountered in greater zp = self.z > 0 /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/moran.py:877: RuntimeWarning: invalid value encountered in greater lp = zl > 0 /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/moran.py:826: RuntimeWarning: invalid value encountered in greater_equal above = sim >= self.Is /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:875: RuntimeWarning: invalid value encountered in greater return (self.a < x) & (x < self.b) /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:875: RuntimeWarning: invalid value encountered in less return (self.a < x) & (x < self.b) /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:1731: RuntimeWarning: invalid value encountered in greater_equal cond2 = (x >= self.b) & cond0 ................................ ====================================================================== FAIL: test_Headbanging_Median_Rate (pysal.esda.tests.test_smoothing.TestHB) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/tests/test_smoothing.py", line 301, in test_Headbanging_Median_Rate np.testing.assert_array_almost_equal(self.sids_hb_rr5, sids_hb_r.r[:5]) File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 979, in assert_array_almost_equal precision=decimal) File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 796, in assert_array_compare raise AssertionError(msg) AssertionError: Arrays are not almost equal to 6 decimals (mismatch 80.0%) x: array([ 0.000756, 0. , 0.000829, 0.001832, 0.004989]) y: array([ 0.000756, 0.000788, 0.000788, 0.001699, 0.004821]) ====================================================================== FAIL: test_Headbanging_Median_Rate_tabular (pysal.esda.tests.test_smoothing.TestHB) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/tests/test_smoothing.py", line 315, in test_Headbanging_Median_Rate_tabular np.testing.assert_array_almost_equal(self.sids_hb_rr5, sids_hb_r.r[:5]) File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 979, in assert_array_almost_equal precision=decimal) File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 796, in assert_array_compare raise AssertionError(msg) AssertionError: Arrays are not almost equal to 6 decimals (mismatch 80.0%) x: array([ 0.000756, 0. , 0.000829, 0.001832, 0.004989]) y: array([ 0.000756, 0.000788, 0.000788, 0.001699, 0.004821]) ---------------------------------------------------------------------- Ran 369 tests in 94.655s FAILED (SKIP=1, failures=2) E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose --exclude test_DistanceBand_arc --exclude-dir=pysal/contrib --exclude-dir pysal/network dh_auto_test: pybuild --test -i python{version} -p 3.6 3.5 returned exit code 13 debian/rules:18: recipe for target 'override_dh_auto_test' failed make[1]: *** [override_dh_auto_test] Error 25
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--- Begin Message ---Source: pysal Source-Version: 1.13.0-5 We believe that the bug you reported is fixed in the latest version of pysal, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 867...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Bas Couwenberg <sebas...@debian.org> (supplier of updated pysal package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 07 Jul 2017 11:27:51 +0200 Source: pysal Binary: python-pysal python3-pysal Architecture: source all Version: 1.13.0-5 Distribution: unstable Urgency: medium Maintainer: Debian GIS Project <pkg-grass-de...@lists.alioth.debian.org> Changed-By: Bas Couwenberg <sebas...@debian.org> Description: python-pysal - Python Spatial Analysis Library - Python 2 python3-pysal - Python Spatial Analysis Library - Python 3 Closes: 867549 Changes: pysal (1.13.0-5) unstable; urgency=medium . * Team upload. * Skip test_Headbanging_Median_Rate{,_tabular} tests, fail with Python 3.6. (closes: #867549) * Bump Standards-Version to 4.0.0, no changes. * Add autopkgtest to test installability. Checksums-Sha1: a01cd46648398ad18a4a2901e235434410cefd1c 2453 pysal_1.13.0-5.dsc c8fef6969d19b0006313e3f61c7986cb915057ef 7276 pysal_1.13.0-5.debian.tar.xz 5b2df54c013634f295377c8bb6d21af5f1f3ebeb 12746 pysal_1.13.0-5_amd64.buildinfo 852fd7675651c5e3d66f5a02ec885cb735fd27a5 10014344 python-pysal_1.13.0-5_all.deb 218131277da9335be7e38cff50daf07994ab0fef 9968116 python3-pysal_1.13.0-5_all.deb Checksums-Sha256: a231c3d45c3a97097fc216ed8371c8fdec84c0f5485be8803825ce730dd3402b 2453 pysal_1.13.0-5.dsc 2e96cf56c60921a0c3298bc1919c07eac8bc0251373a89792a42f31df9e77a45 7276 pysal_1.13.0-5.debian.tar.xz d6f965c36f79bfe20f2ec0bcdadc3bf9c7359da1502ef7c9e91173c8e43c7c3e 12746 pysal_1.13.0-5_amd64.buildinfo 178f740a6bf147ac3b217677fa26f36fb006dabd35cab6745b626565f48311e2 10014344 python-pysal_1.13.0-5_all.deb 6130f86d27b6091308aaac36124095367ec2b80ac55e427ddfb14c9658857c0c 9968116 python3-pysal_1.13.0-5_all.deb Files: 7330fbb1e07568aea613f3f83c0683c9 2453 python optional pysal_1.13.0-5.dsc 938bf3ffb987d3ae7a05234afe7a9c3b 7276 python optional pysal_1.13.0-5.debian.tar.xz 490ca7844ca8eb8781539c8791e87af0 12746 python optional pysal_1.13.0-5_amd64.buildinfo 379d83ec12df6bc76b5fa99f7f016ef5 10014344 python optional python-pysal_1.13.0-5_all.deb 33e73d3f80245e0129ab04b262cc4402 9968116 python optional python3-pysal_1.13.0-5_all.deb -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEgYLeQXBWQI1hRlDRZ1DxCuiNSvEFAllfV0QACgkQZ1DxCuiN SvEoWhAAqnCz8m+1qtH4f/K3yVifqkgaj9wqDjG+rtxzTPBpMH2T2tZiEUxU5J6x YfS1OdNtBZXqCEhGlUwG7D/zBM+yGTDeuYG5ZiQTr4Yrj7MOdMTDYMQz2J4QJuMX Ci1n1hogbC+e4G3wOZxdjs1Nn1I8NSEoSaX2TfjJVAl4n/FY+iR13FHxWAnnEbuF hT0z3ukfQhYBbuRG+nkZXPP/vjxu/T54HGW8vKLXe1rlLykUVVGRPMeHSJRAsLXa ObZuMGlcJc4kH8U9QoaLQUk31YC0sZ4ZriGAgZNYtrorJnzTTXkHgAkHPAPtZUBB CKVMtRJ6uKV151Bv0KUt4fbFOHNiDubqHRmoyAk/sYPfv/lD61LTzF/EUEMarh+f vltg+rCo5QlD8QiiQ1O2AX7jR+Tdr2QCNeey3EzJI8W/ymwqK+/fEfQ6CUm8XSFb ZeCcnYaxLWx7rxj3Wr+6pjSjwCEgrQk7rKA5JvkzdnM8EjqZU0xXEQviJOvWGF8z tqvRAQdE3YRfu655g+WxWtxzswK+E1GxgZ0T+Wrc3PsvsldxJBSf6qkQFY0NaIsB z0SfnkVsazPV4EhVtSvpUmeqSNa8tQ6Tc0pxa0Ony0ADTeylivwqPM0w+dU2zPTr 2uNyBpWI+8P1gYIx1oNlB2r17ckWVRfRf9kEu7Q2w4YduND29lI= =eP43 -----END PGP SIGNATURE-----
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