Source: pysal
Version: 1.13.0-4
Severity: serious
Tags: buster sid
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/pysal.html
...
I: pybuild base:184: cd /build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build;
python3.6 -m nose --exclude test_DistanceBand_arc --exclude-dir=pysal/contrib
--exclude-dir pysal/network
Trying `CDLL(libgeos_c.so.1)`
Library path: 'libgeos_c.so.1'
DLL: <CDLL 'libgeos_c.so.1', handle 374a360 at 0x7fc9b3402f98>
Trying `CDLL(libc.so.6)`
Library path: 'libc.so.6'
DLL: <CDLL 'libc.so.6', handle 7fc9c85c14e0 at 0x7fc9bb88bc18>
.........../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/cg/segmentLocator.py:117:
FutureWarning: comparison to `None` will result in an elementwise object
comparison in the future.
if self._hashKeys == None:
...............................................................................................................................................................S....../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:189:
UserWarning: There are 3 disconnected observations
warnings.warn("There are %d disconnected observations" % ni)
/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:190:
UserWarning: Island ids: 6, 8, 11
warnings.warn("Island ids: %s" % ', '.join(str(island) for island in
self.islands))
........./build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/core/IOHandlers/gwt.py:148:
RuntimeWarning: DBF relating to GWT was not found, proceeding with unordered
string ids.
warn("DBF relating to GWT was not found, proceeding with unordered string
ids.", RuntimeWarning)
......................../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:189:
UserWarning: There are 7 disconnected observations
warnings.warn("There are %d disconnected observations" % ni)
/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/weights/weights.py:190:
UserWarning: Island ids: 5, 9, 10, 11, 12, 14, 15
warnings.warn("Island ids: %s" % ', '.join(str(island) for island in
self.islands))
........../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/core/Tables.py:215:
UserWarning: Encountered the following error in attempting to read the
shapefile
/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/examples/us_income/usjoin.shp.
Proceeding with read, but the error will be reproduced below:
[Errno 2] No such file or directory:
'/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/examples/us_income/usjoin.shp'
' {}'.format(self.dataPath[:-3]+'shp', e))
...............................................................................FF..................................../build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/moran.py:876:
RuntimeWarning: invalid value encountered in greater
zp = self.z > 0
/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/moran.py:877:
RuntimeWarning: invalid value encountered in greater
lp = zl > 0
/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/moran.py:826:
RuntimeWarning: invalid value encountered in greater_equal
above = sim >= self.Is
/usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:875:
RuntimeWarning: invalid value encountered in greater
return (self.a < x) & (x < self.b)
/usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:875:
RuntimeWarning: invalid value encountered in less
return (self.a < x) & (x < self.b)
/usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:1731:
RuntimeWarning: invalid value encountered in greater_equal
cond2 = (x >= self.b) & cond0
................................
======================================================================
FAIL: test_Headbanging_Median_Rate (pysal.esda.tests.test_smoothing.TestHB)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/tests/test_smoothing.py",
line 301, in test_Headbanging_Median_Rate
np.testing.assert_array_almost_equal(self.sids_hb_rr5, sids_hb_r.r[:5])
File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 979, in
assert_array_almost_equal
precision=decimal)
File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 796, in
assert_array_compare
raise AssertionError(msg)
AssertionError:
Arrays are not almost equal to 6 decimals
(mismatch 80.0%)
x: array([ 0.000756, 0. , 0.000829, 0.001832, 0.004989])
y: array([ 0.000756, 0.000788, 0.000788, 0.001699, 0.004821])
======================================================================
FAIL: test_Headbanging_Median_Rate_tabular
(pysal.esda.tests.test_smoothing.TestHB)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build/pysal/esda/tests/test_smoothing.py",
line 315, in test_Headbanging_Median_Rate_tabular
np.testing.assert_array_almost_equal(self.sids_hb_rr5, sids_hb_r.r[:5])
File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 979, in
assert_array_almost_equal
precision=decimal)
File "/usr/lib/python3/dist-packages/numpy/testing/utils.py", line 796, in
assert_array_compare
raise AssertionError(msg)
AssertionError:
Arrays are not almost equal to 6 decimals
(mismatch 80.0%)
x: array([ 0.000756, 0. , 0.000829, 0.001832, 0.004989])
y: array([ 0.000756, 0.000788, 0.000788, 0.001699, 0.004821])
----------------------------------------------------------------------
Ran 369 tests in 94.655s
FAILED (SKIP=1, failures=2)
E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd
/build/1st/pysal-1.13.0/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose
--exclude test_DistanceBand_arc --exclude-dir=pysal/contrib --exclude-dir
pysal/network
dh_auto_test: pybuild --test -i python{version} -p 3.6 3.5 returned exit code 13
debian/rules:18: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 25
