Your message dated Fri, 31 Mar 2017 07:03:45 +0000
with message-id <e1ctqb3-000hdm...@fasolo.debian.org>
and subject line Bug#859107: fixed in jmodeltest 2.1.10+dfsg-4
has caused the Debian Bug report #859107,
regarding libbrowserlauncher-java dependency is going to be removed from Stretch
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
859107: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859107
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: jmodeltest
Version: 2.1.10+dfsg-3
Severity: serious
Control: tags -1 patch
As pointed out in
https://bugs.debian.org/859001
https://bugs.debian.org/859004
https://bugs.debian.org/859005
I recommend to remove libbrowserlauncher from Stretch because it is not
working at all.
To prevent jmodeltest from being removed, here is a patch that replaces
the package by a freedesktop.org compatible miniversion.
Cheers
Ole
diff -Nru jmodeltest-2.1.10+dfsg/debian/changelog jmodeltest-2.1.10+dfsg/debian/changelog
--- jmodeltest-2.1.10+dfsg/debian/changelog 2016-08-17 15:43:53.000000000 +0200
+++ jmodeltest-2.1.10+dfsg/debian/changelog 2017-03-30 14:03:42.000000000 +0200
@@ -1,3 +1,10 @@
+jmodeltest (2.1.10+dfsg-3.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Use custom BrowserLauncher. Fixes: #-1
+
+ -- Ole Streicher <oleb...@debian.org> Thu, 30 Mar 2017 14:03:42 +0200
+
jmodeltest (2.1.10+dfsg-3) unstable; urgency=medium
* Add missing command line arguments to wrapper
diff -Nru jmodeltest-2.1.10+dfsg/debian/control jmodeltest-2.1.10+dfsg/debian/control
--- jmodeltest-2.1.10+dfsg/debian/control 2016-08-17 15:43:53.000000000 +0200
+++ jmodeltest-2.1.10+dfsg/debian/control 2017-03-30 13:53:46.000000000 +0200
@@ -13,7 +13,6 @@
libjfreechart-java,
libmpj-java,
libpal-java,
- libbrowserlauncher-java,
prottest,
texlive-latex-base,
texlive-fonts-recommended,
diff -Nru jmodeltest-2.1.10+dfsg/debian/copyright jmodeltest-2.1.10+dfsg/debian/copyright
--- jmodeltest-2.1.10+dfsg/debian/copyright 2016-08-17 15:43:53.000000000 +0200
+++ jmodeltest-2.1.10+dfsg/debian/copyright 2017-03-30 14:03:26.000000000 +0200
@@ -26,7 +26,8 @@
License: GPL-3+
Files: debian/*
-Copyright: 2015 Andreas Tille <ti...@debian.org>
+Copyright: 2015 Andreas Tille <ti...@debian.org>,
+ 2017 Ole Streicher <oleb...@debian.org>
License: GPL-2+
License: GPL-2+
diff -Nru jmodeltest-2.1.10+dfsg/debian/patches/series jmodeltest-2.1.10+dfsg/debian/patches/series
--- jmodeltest-2.1.10+dfsg/debian/patches/series 2016-08-17 15:43:53.000000000 +0200
+++ jmodeltest-2.1.10+dfsg/debian/patches/series 2017-03-30 13:56:17.000000000 +0200
@@ -2,3 +2,4 @@
do_not_chmod_anything_in_usr_bin.patch
adapt_config.patch
replace_natbib_bst_by_plainnat.patch
+use_custom_BrowserLauncher.patch
diff -Nru jmodeltest-2.1.10+dfsg/debian/patches/use_custom_BrowserLauncher.patch jmodeltest-2.1.10+dfsg/debian/patches/use_custom_BrowserLauncher.patch
--- jmodeltest-2.1.10+dfsg/debian/patches/use_custom_BrowserLauncher.patch 1970-01-01 01:00:00.000000000 +0100
+++ jmodeltest-2.1.10+dfsg/debian/patches/use_custom_BrowserLauncher.patch 2017-03-30 14:02:06.000000000 +0200
@@ -0,0 +1,23 @@
+Author: Ole Streicher <oleb...@debian.org>
+Last-Update: Thu, 30 Mar 2017 13:58:11 +0200
+Description: Use custom BrowserLauncher
+
+--- /dev/null
++++ b/src/main/java/edu/stanfort/ejalbert/BrowserLauncher.java
+@@ -0,0 +1,16 @@
++package edu.stanford.ejalbert;
++import java.io.IOException;
++
++/*
++ * Simple replacement for the BrowserLauncher, which is compatible to the
++ * Free Desktop Consortium. Written by Ole Streicher <oleb...@debian.org>
++ * License here: GPL-2+, to match with the other Debian files
++ */
++public class BrowserLauncher {
++ public void openURLinBrowser(String url) {
++ try {
++ Runtime.getRuntime().exec(new String[] { "xdg-open", url } );
++ } catch (IOException e) {
++ }
++ }
++}
--- End Message ---
--- Begin Message ---
Source: jmodeltest
Source-Version: 2.1.10+dfsg-4
We believe that the bug you reported is fixed in the latest version of
jmodeltest, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 859...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated jmodeltest package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 31 Mar 2017 08:24:53 +0200
Source: jmodeltest
Binary: jmodeltest
Architecture: source all
Version: 2.1.10+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
jmodeltest - HPC selection of models of nucleotide substitution
Closes: 859107
Changes:
jmodeltest (2.1.10+dfsg-4) unstable; urgency=medium
.
[ Ole Streicher ]
* Remove BrowserLauncher dependency. Closes: #859107
Checksums-Sha1:
dec27111720629757e41a0e0e8539956334721a8 2232 jmodeltest_2.1.10+dfsg-4.dsc
8fc8b7a2879279bcd2cf023ed08cb45f900a662e 7248
jmodeltest_2.1.10+dfsg-4.debian.tar.xz
9970cb16965b2387438c5d353994857f5cd601d8 980688
jmodeltest_2.1.10+dfsg-4_all.deb
583f3f6e9c5f3d1db44c68f18d423f05a8b471c0 11443
jmodeltest_2.1.10+dfsg-4_amd64.buildinfo
Checksums-Sha256:
ed448276862b6fc79248deab40ffa59fb5dab1e570dcf60c02fcc95fe06ce460 2232
jmodeltest_2.1.10+dfsg-4.dsc
7a73c2293d796fffc758c2e04e533c350099dffd5a313f1ba167390263395520 7248
jmodeltest_2.1.10+dfsg-4.debian.tar.xz
56a7dd2d0d285b5ba10fdfb312ad140efe1cd32928550c95c1b0dc497cb8e5c6 980688
jmodeltest_2.1.10+dfsg-4_all.deb
2fc8d3926f64af08097b1cdfe6592d81f72222b12d970f01fb4abbafb593a93e 11443
jmodeltest_2.1.10+dfsg-4_amd64.buildinfo
Files:
92d6eaf7d8802c70bfa857f012766dc9 2232 science optional
jmodeltest_2.1.10+dfsg-4.dsc
bcb96f7c24a2b0a20956e47db3ecfb9c 7248 science optional
jmodeltest_2.1.10+dfsg-4.debian.tar.xz
72b92e3553f8731941eaa6a339a23435 980688 science optional
jmodeltest_2.1.10+dfsg-4_all.deb
0dd9d208076d7176ef4714227e7d1654 11443 science optional
jmodeltest_2.1.10+dfsg-4_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
iQIcBAEBCAAGBQJY3frxAAoJEFeKBJTRxkbRUNsP/ArSFmueUk3SKaAXapSMxJk+
oFGGUx6y0uAX6Q74ka34xJc0leS3R6c8WzUOoahWn/eTZqHOVG9Bcwv7omIEWuUX
KEhx8Kxo2ES6cmqPJvBzQYIJhSLT6QOSJMBvL4clyepJZ62EwhH4SaEY03BB2+Yb
RCDIG1jFvnHYQEOyh/pkKiwhTci4Vl/s177/hGWF0rjVIL7VWCww7K0E1qhDSji+
RdqLy4QDLyzWXotSuVlIRxP5s2W1gCc1ttWnDk2oOdYKwyr2Nlpp6IsOCiT9HcNs
MObU1r6T+r6xSoj9DV6OAvNO1i/S5h3HkTdw2FmspC+QsfPwb7bJzn9oXwkqe4F9
0YDfemFwFP7lhHodeNhe9LFXkurobrdTzVEsOTjQhijYgIg5vl5BBN2yy2NQnBXE
Z2tECokkFYlwkM5FrhnfTRVDFNyaIXgx0gbTG1BzlJwlPHLaFhzDijlS7OdFUcEZ
ONlaog0zIY63JjjrLd52UPJMdhvalZxGXl6rr7u2hxr5SQA1qXsHWgSbXiOYbgXz
8JayxHoRTNlrM+0FMFuySTKRStcNy2vcmPBZ0e0zsMJVfpMYJBT3YhNg5wCDJgZv
iRRF+9hwDu+lGaRps4UlRMlgH/ikdsURtkjGlsIiW6GV+ZnkAsSUvo6RdN+LIQdH
SQHa8EA0haLgGxqTP4i1
=rTCQ
-----END PGP SIGNATURE-----
--- End Message ---
