Your message dated Sat, 24 Dec 2016 09:52:20 +0000
with message-id <e1ckj00-000a0f...@fasolo.debian.org>
and subject line Bug#849176: fixed in python-skbio 0.5.1-2
has caused the Debian Bug report #849176,
regarding python-skbio: FTBFS: Test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
849176: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=849176
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-skbio
Version: 0.5.1-1
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20161219 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> multiple_comparisons_correction=None)
> File
> "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/composition.py",
> line 971, in ancom
> _logratio_mat = _log_compare(mat.values, cats.values, significance_test)
> File
> "/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/skbio/stats/composition.py",
> line 1084, in _log_compare
> arr=ratio)
> File "/usr/lib/python3/dist-packages/numpy/lib/shape_base.py", line 133, in
> apply_along_axis
> if res.shape == ():
> AttributeError: 'F_onewayResult' object has no attribute 'shape'
>
> ----------------------------------------------------------------------
> Ran 2238 tests in 42.139s
>
> FAILED (SKIP=30, errors=15)
> E: pybuild pybuild:276: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose
> dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.5 returned
> exit code 13
> debian/rules:22: recipe for target 'override_dh_auto_test' failed
The full build log is available from:
http://aws-logs.debian.net/2016/12/19/python-skbio_0.5.1-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: python-skbio
Source-Version: 0.5.1-2
We believe that the bug you reported is fixed in the latest version of
python-skbio, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 849...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-skbio package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 24 Dec 2016 09:27:18 +0100
Source: python-skbio
Binary: python-skbio-doc python3-skbio
Architecture: source
Version: 0.5.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-skbio-doc - Data structures, algorithms, educational resources for
bioinforma
python3-skbio - Python3 data structures, algorithms, educational resources for
bi
Closes: 848758 849176
Changes:
python-skbio (0.5.1-2) unstable; urgency=medium
.
[ Kevin Murray ]
* Pull in upstream's fix of numpy issue
Closes: #849176, #848758
.
[ Andreas Tille ]
* debhelper 10
* d/watch: version=4
Checksums-Sha1:
5aea42b33b3863ab3af03f91d49355a2316ac1c4 2563 python-skbio_0.5.1-2.dsc
27d899c9ee55f2cf2edf3fceb7cb758a36560d97 5724
python-skbio_0.5.1-2.debian.tar.xz
Checksums-Sha256:
88ce0f2ab043d2f73a353b680aa258ed9a12785dd8db9717d72200836149524b 2563
python-skbio_0.5.1-2.dsc
aa4f0bce3eee7f1bf15be3f15ba6ab7feb70d6f3e9566e88c4751bbcce30ca4e 5724
python-skbio_0.5.1-2.debian.tar.xz
Files:
3048c95383f0d4648d8bf6aee1d3a53a 2563 python optional python-skbio_0.5.1-2.dsc
fb763de7ab5d2de9dd2463fe063201dc 5724 python optional
python-skbio_0.5.1-2.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=g2Pz
-----END PGP SIGNATURE-----
--- End Message ---
