Your message dated Wed, 21 Dec 2016 09:08:55 +0000 with message-id <e1cjctl-000ffj...@fasolo.debian.org> and subject line Bug#848735: fixed in pynast 1.2.2-2 has caused the Debian Bug report #848735, regarding pynast: FTBFS: Test failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 848735: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848735 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: pynast Version: 1.2.2-1 Severity: serious Tags: stretch sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20161219 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > aln = align_unaligned_seqs_f(seqs,moltype,params=params) > File "/<<PKGBUILDDIR>>/build/lib.linux-x86_64-2.7/pynast/util.py", line > 153, in blast_align_unaligned_seqs > raise RuntimeError, "bl2seq failed:\n %s" % bl2seq_res > RuntimeError: bl2seq failed: > 768 > > ---------------------------------------------------------------------- > Ran 30 tests in 1.050s > > FAILED (errors=1) > > Testing /<<PKGBUILDDIR>>/scripts/pynast. > > Failed the following unit tests. > /<<PKGBUILDDIR>>/tests/test_util.py > debian/rules:30: recipe for target 'override_dh_auto_test' failed The full build log is available from: http://aws-logs.debian.net/2016/12/19/pynast_1.2.2-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: pynast Source-Version: 1.2.2-2 We believe that the bug you reported is fixed in the latest version of pynast, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 848...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated pynast package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 21 Dec 2016 08:27:07 +0100 Source: pynast Binary: pynast Architecture: source all Version: 1.2.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: pynast - alignment of short DNA sequences Closes: 848735 Changes: pynast (1.2.2-2) unstable; urgency=medium . * Fix test failures with new version of ncbi-blast+ (Thanks for the patch to Aaron M. Ucko) Closes: #848735 * cme fix dpkg-control * debhelper 10 * d/watch: version=4 * DEP5 fix Checksums-Sha1: 74e21d8f193f74fca12be20f2dcd2706aea603e3 2090 pynast_1.2.2-2.dsc eb4f4aff4ff713b1232f80883376799d4b8bbda9 14184 pynast_1.2.2-2.debian.tar.xz 5ab1f8b8c7d4e886a80fa7e8dc5f5d8d2c3743e0 83450 pynast_1.2.2-2_all.deb 2acf6c99c5dbf1913c6fdb4c50a1d3b26ea1eb6c 7912 pynast_1.2.2-2_amd64.buildinfo Checksums-Sha256: 291f4fd68b3244cbeb5b6d6e3ffa02fda0a39f490bc33311a00d2a5a119e1cc0 2090 pynast_1.2.2-2.dsc 69fa7e510c49db73ebe774beda7d44e2b04f47757cb776dd2e2e728e577f250b 14184 pynast_1.2.2-2.debian.tar.xz 87ab9020049fe1af4e590fc70c98a6f5ea5af51f8672cffe5a6a0b464520e5ca 83450 pynast_1.2.2-2_all.deb d22dc5756a4ad0b1dc03030c85fdcdef3cd849c50a6468d2ff63dde83ff038b6 7912 pynast_1.2.2-2_amd64.buildinfo Files: 0aa10161f49ca1b6e5a31b8405d2c330 2090 python optional pynast_1.2.2-2.dsc 10c908752fbbb9c42643e0bd75f33c39 14184 python optional pynast_1.2.2-2.debian.tar.xz f9aa3e84b50a9248c2e19d2439b7c88f 83450 python optional pynast_1.2.2-2_all.deb 7ceba36c957dd29302eccd196884de84 7912 python optional pynast_1.2.2-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJYWjHkAAoJEFeKBJTRxkbRdnIP/R75KDl0X8S/uiw1rIKCht+x B2UqvceCMEyl5z5oB1DjkAarbLzLUw2FonL0qLU58XRLq5nB4tg0gIzEqsH8/tBQ BHw3rXR8eVBSA5+oa5HNae9aN0LOG+obw8uCsFhxnh5WQJyO3jVW4Y7SbVyAYoIx ymYU5qGQKWgOHjmTAuvOFfxmQ1kJIw33dZYbjmsp5Rjw/R4THe3Sf9s5VfTOQLUz 3KQySLDiU5pbf9UqexOOKbb8H9ZfI/1wftIUTjgsWRQbwfJVA+tSitnRp0IR1+u6 4fUSbEwY7rJa+lscMDgSuJWvf09GmSWg4MA/k6ELGj8LqM6k0yT/7ioAyYdQyn/6 c4Oh/9ApqYYUVO65E51tV12xu104QgSs9cydga5cD9M/VbhTk8P7TS/TYD3M8Bcj 3+6GxlFOI+LTpMPcS4nB/47gXwBQcK8rt6vT+GmkAZocfbhAmJhCdQPlZ7ULmV/O bkQjvRJAtdZuT8Ua1/xx5qZWThRU3Kq1gPXtD6s041zwQmiBhaWQKuQRR1tGPDpW /pvK5QpJbEWAko8+1k+LOrQOnpTUsKmuCCeofkCC4Lz4Un0GLIV+fFhQ5LY+ZnGH m5GJpQUpuZmJb9O0RMvknbmKCNgraTf2ODQcDNn+WpZ17cfDxzdtJInWZReFqQop ianp49HFhKNP8vIe7Z6Q =SFqs -----END PGP SIGNATURE-----
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