Hi Aaron and Olivier,
seems the latest upgrade of ncbi-tools affected further packages.
Aaron, may I assume that changing Build-Depends to
ncbi-blast+-legacy (>= 2.5.0-2~) | blast2
also in the case of pynast is apropriate?
Could you give some hint for a patch to fix this test suite error:
======================================================================
ERROR: test_align_two_seqs_with_blast (__main__.PyNastTests)
align_two_seqs: fns for simple alignments with blast (bl2seq)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/tests/test_util.py", line 332, in
test_align_two_seqs_with_blast
self.assertEqual(align_two_seqs(s1,s2,f),(s1,s2))
File "/<<PKGBUILDDIR>>/build/lib.linux-x86_64-2.7/pynast/util.py", line 243,
in align_two_seqs
aln = align_unaligned_seqs_f(seqs,moltype,params=params)
File "/<<PKGBUILDDIR>>/build/lib.linux-x86_64-2.7/pynast/util.py", line 153,
in blast_align_unaligned_seqs
raise RuntimeError, "bl2seq failed:\n %s" % bl2seq_res
RuntimeError: bl2seq failed:
768
----------------------------------------------------------------------
Ran 30 tests in 1.050s
Kind regards
Andreas.
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