Your message dated Tue, 20 Dec 2016 09:05:13 +0000
with message-id <e1cjgmd-000cpu...@fasolo.debian.org>
and subject line Bug#847339: fixed in pirs 2.0.2+dfsg-4
has caused the Debian Bug report #847339,
regarding pirs: FTBFS when built with dpkg-buildpackage -A (ln: failed to
create symbolic link)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
847339: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=847339
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:pirs
Version: 2.0.2+dfsg-2
Severity: serious
Tags: patch
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -A"
(which is what the "Arch: all" autobuilder would do to build it)
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with autoreconf --sourcedirectory=src
dh_testdir -i -O--sourcedirectory=src
dh_update_autotools_config -i -O--sourcedirectory=src
debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
#cd src && ./genauto.sh
cd src && \
mv INSTALL INSTALL.save && \
autoreconf --install && \
mv INSTALL.save INSTALL && \
cd /<<BUILDDIR>>/pirs-2.0.2+dfsg
configure.ac:9: installing './compile'
[... snipped ...]
fakeroot debian/rules binary-indep
dh binary-indep --with autoreconf --sourcedirectory=src
dh_testroot -i -O--sourcedirectory=src
dh_prep -i -O--sourcedirectory=src
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_auto_install --sourcedirectory=src/stator/gcContCvgBias
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_install
mkdir -p debian/pirs/usr/lib/pirs
find src -name "*.pl" -exec cp -a \{\} debian/pirs/usr/lib/pirs \;
rm -f debian/pirs/usr/lib/pirs/autobam.pl
sed -i 's:#!/bin/env:#!/usr/bin/env:' debian/pirs/usr/lib/pirs/*.pl
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
dh_installdocs
cp -a src/stator/readme.txt debian/pirs/usr/share/doc/pirs/strator_readme.txt
cp: cannot create regular file
'debian/pirs/usr/share/doc/pirs/strator_readme.txt': No such file or directory
debian/rules:60: recipe for target 'override_dh_installdocs' failed
make[1]: *** [override_dh_installdocs] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/pirs-2.0.2+dfsg'
debian/rules:17: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
This happens because debian/pirs/[...] does not exist, as we are creating
arch-independent packages only.
Tha (trivial) patch below should probably work, but I would use
debian/pirs.docs instead to have an even shorter debian/rules.
Please consider uploading in source-only form as soon as you can
(i.e. after the first upload, where source-only uploads are not
allowed yet). That way we will prevent bugs like this one to propagate
to testing and also we will have official build logs available here:
https://buildd.debian.org/status/package.php?p=pirs
Thanks.
--- a/debian/rules
+++ b/debian/rules
@@ -56,6 +56,6 @@ override_dh_link:
override_dh_installchangelogs:
dh_installchangelogs NEWS
-override_dh_installdocs:
+override_dh_installdocs-arch:
dh_installdocs
cp -a src/stator/readme.txt
debian/$(DEBPKGNAME)/usr/share/doc/$(DEBPKGNAME)/strator_readme.txt
--- End Message ---
--- Begin Message ---
Source: pirs
Source-Version: 2.0.2+dfsg-4
We believe that the bug you reported is fixed in the latest version of
pirs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 847...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated pirs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 19 Dec 2016 16:35:40 +0100
Source: pirs
Binary: pirs pirs-profiles pirs-examples
Architecture: source
Version: 2.0.2+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
pirs - Profile based Illumina pair-end Reads Simulator
pirs-examples - profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles - profile basd Illumina pair-end Reads Simulator (profile data)
Closes: 847339
Changes:
pirs (2.0.2+dfsg-4) unstable; urgency=medium
.
* Really fix build for -A
Closes: #847339
Checksums-Sha1:
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4198ac57403e20e26ce74a9f5eca7c6291dea611 5556 pirs_2.0.2+dfsg-4.debian.tar.xz
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pirs_2.0.2+dfsg-4.dsc
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pirs_2.0.2+dfsg-4.debian.tar.xz
Files:
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--- End Message ---
