Your message dated Sat, 10 Sep 2016 22:24:29 +0000 with message-id <e1biqhj-0006bw...@franck.debian.org> and subject line Bug#837235: fixed in r-bioc-deseq2 1.12.4-1 has caused the Debian Bug report #837235, regarding r-bioc-deseq2: FTBFS: build-dependency not installable: r-cran-knitr to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 837235: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=837235 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-deseq2 Version: 1.12.3-2 Severity: serious Tags: stretch sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20160910 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > +------------------------------------------------------------------------------+ > | Install package build dependencies > | > +------------------------------------------------------------------------------+ > > > Setup apt archive > ----------------- > > Merged Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-genefilter, > r-cran-ggplot2, r-cran-hmisc, r-cran-rcpparmadillo, r-cran-foreign, > r-cran-nnet, r-bioc-genomicranges, r-bioc-summarizedexperiment, > r-bioc-biocparallel, r-bioc-geneplotter, r-cran-knitr > Filtered Build-Depends: debhelper (>= 9), cdbs, r-base-dev, > r-bioc-genefilter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpparmadillo, > r-cran-foreign, r-cran-nnet, r-bioc-genomicranges, > r-bioc-summarizedexperiment, r-bioc-biocparallel, r-bioc-geneplotter, > r-cran-knitr > dpkg-deb: building package 'sbuild-build-depends-r-bioc-deseq2-dummy' in > '/<<BUILDDIR>>/resolver-V1enNf/apt_archive/sbuild-build-depends-r-bioc-deseq2-dummy.deb'. > dpkg-scanpackages: warning: Packages in archive but missing from override > file: > dpkg-scanpackages: warning: sbuild-build-depends-r-bioc-deseq2-dummy > dpkg-scanpackages: info: Wrote 1 entries to output Packages file. > Ign:1 copy:/<<BUILDDIR>>/resolver-V1enNf/apt_archive ./ InRelease > Get:2 copy:/<<BUILDDIR>>/resolver-V1enNf/apt_archive ./ Release [957 B] > Ign:3 copy:/<<BUILDDIR>>/resolver-V1enNf/apt_archive ./ Release.gpg > Get:4 copy:/<<BUILDDIR>>/resolver-V1enNf/apt_archive ./ Sources [448 B] > Get:5 copy:/<<BUILDDIR>>/resolver-V1enNf/apt_archive ./ Packages [536 B] > Fetched 1941 B in 0s (0 B/s) > Reading package lists... > W: No sandbox user '_apt' on the system, can not drop privileges > Reading package lists... > > Install r-bioc-deseq2 build dependencies (apt-based resolver) > ------------------------------------------------------------- > > Installing build dependencies > Reading package lists... > Building dependency tree... > Reading state information... > Some packages could not be installed. This may mean that you have > requested an impossible situation or if you are using the unstable > distribution that some required packages have not yet been created > or been moved out of Incoming. > The following information may help to resolve the situation: > > The following packages have unmet dependencies: > sbuild-build-depends-r-bioc-deseq2-dummy : Depends: r-cran-knitr but it is > not going to be installed > E: Unable to correct problems, you have held broken packages. > apt-get failed. The full build log is available from: http://aws-logs.debian.net/2016/09/10/r-bioc-deseq2_1.12.3-2_unstable.log (That DNS record was just updated. Use http://ec2-52-58-237-241.eu-central-1.compute.amazonaws.com if it doesn't work) A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: r-bioc-deseq2 Source-Version: 1.12.4-1 We believe that the bug you reported is fixed in the latest version of r-bioc-deseq2, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 837...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-deseq2 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 10 Sep 2016 21:53:51 +0200 Source: r-bioc-deseq2 Binary: r-bioc-deseq2 Architecture: source amd64 Version: 1.12.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: r-bioc-deseq2 - R package for RNA-Seq Differential Expression Analysis Closes: 837235 Changes: r-bioc-deseq2 (1.12.4-1) unstable; urgency=medium . * Team upload * New upstream version Closes: #837235 Checksums-Sha1: 800075a6043eb6ebc7bcc48bc42bf00e7d9d382b 2240 r-bioc-deseq2_1.12.4-1.dsc 49cf58ee3147aa51b2659c96cc9281bc98f8ec14 1324776 r-bioc-deseq2_1.12.4.orig.tar.gz 1198681c361182b7859f485812356d409f29e6c8 6092 r-bioc-deseq2_1.12.4-1.debian.tar.xz afa63c0a591c706c099a482005e0cafa6b42f6cd 631596 r-bioc-deseq2-dbgsym_1.12.4-1_amd64.deb e460375d46ffa2a3f0fa98c0add37f5cc06d511c 1546908 r-bioc-deseq2_1.12.4-1_amd64.deb Checksums-Sha256: 8797f621df150973735bbdc7c56db96c050cb04ce0c27eabc4512844363c2ffc 2240 r-bioc-deseq2_1.12.4-1.dsc dde970f3d7ccf9ea1cc8c153cdd691095363fd9ca038ac8e54bdc4db803b078a 1324776 r-bioc-deseq2_1.12.4.orig.tar.gz 7283d5771916ae2e4f426eab616a80120bf233c6d69ebc9ffe365605e1022a04 6092 r-bioc-deseq2_1.12.4-1.debian.tar.xz 774b7f39bdad2dbd1d19821c2bd9be3ed53ecf560542fe712d7042523fda0f44 631596 r-bioc-deseq2-dbgsym_1.12.4-1_amd64.deb 2b26568e2943d01f028c120ad95a486c181a0d8789325d548633f585102b27f7 1546908 r-bioc-deseq2_1.12.4-1_amd64.deb Files: 00076da7b25e14655e75878b4a8b885a 2240 gnu-r optional r-bioc-deseq2_1.12.4-1.dsc 08f115d77d4abe94f655be6c9f3144f8 1324776 gnu-r optional r-bioc-deseq2_1.12.4.orig.tar.gz 256d450a7e909cf50a026edddebd03c8 6092 gnu-r optional r-bioc-deseq2_1.12.4-1.debian.tar.xz 93f683039d7f5d498793e656fc0cf1c9 631596 debug extra r-bioc-deseq2-dbgsym_1.12.4-1_amd64.deb 8022f68585e3055f5165e57ea01b3208 1546908 gnu-r optional r-bioc-deseq2_1.12.4-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJX1GX3AAoJEFeKBJTRxkbRXYcP/1utB5h0KVIByM1GoD/EKkIy X19NnLnhfjA2Wk1kjsu2yj2yRS4CWPtRxTMhiCU9ULUqGfjgpYDL9/Q03mNXVKQE K051AhkBgrpd55vPNsY+JG/j75IY3r2s+Qt7XN5ib0R8zeYakgM5iFznHik4XSuR XyjC96CgclvU2L4v7WBWiB83hrAtsa4RKjsmf8Cpafx8Kq0lv1QN8T5KOVjFq5a3 wol9Tm3taWmE7ufb3dNuOstBU1mJTwNFEpDD8trdLFY4Vgp8cYkEgzo4CM+GDa5b RyH0jaP5oiNsBTOuY+IOF1DmmZ40W4KOGIe6TM13sTkIv9Cc0ZprC1sa0QiGPOyo rgev8o7hj+eR9p6Syg5OiZiRa8zlLqrnVyhMYipJrflzhKroGMstSn7gwjRf5s3T zHPyvqfmzqfIZWlS+dqwLDuCooO5Vlo51stXVOT3JHIGujZJDMwRMQUB2OUAn6Pw w5lJq/1WLHcdTZUyELzU1E2tJDFXMu385rs9Az8Vt9eORJXcpWZMfnWP8QFWz760 ebDZipP+s8Llo/xFh49N8aDJeg/fkFOITFO7YiBS7va6ko9Zr15AJHyBhcWggT8Z X5MQGozhE3xi76vKzGnOA/4PMiCIT29GZWxWWbrBDi8sQsjqjGw2UxTJ+uVYGoH+ dV56qA/nGDSERQNSHGm6 =sRny -----END PGP SIGNATURE-----
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