Your message dated Mon, 05 Sep 2016 05:06:07 +0000
with message-id <e1bgm6h-0005ed...@franck.debian.org>
and subject line Bug#836538: fixed in nipy 0.4.0+git26-gf8d3149-2
has caused the Debian Bug report #836538,
regarding nipy: FTBFS in testing (failing tests)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
836538: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836538
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:nipy
Version: 0.4.0+git26-gf8d3149-1
Severity: serious
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -A"
(which is what the "Arch: all" autobuilder would do to build it)
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh --buildsystem=python_distutils --with=python2 build-indep
dh_testdir -i -O--buildsystem=python_distutils
dh_update_autotools_config -i -O--buildsystem=python_distutils
dh_auto_configure -i -O--buildsystem=python_distutils
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149'
dh_auto_build
pyversions: missing X(S)-Python-Version in control file, fall back to
debian/pyversions
python-dbg setup.py build --force
lapack_opt_info:
openblas_lapack_info:
libraries openblas not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
[... snipped ...]
../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/viz_tools/slicers.py:376:
UserWarning: empty mask
get_mask_bounds(not_mask, affine)
.................S../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:235:
VisibleDeprecationWarning: using a non-integer number instead of an integer
will result in an error in the future
delta = sorted_input[limiteinf + 1:limitesup + 1] \
/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:236:
VisibleDeprecationWarning: using a non-integer number instead of an integer
will result in an error in the future
- sorted_input[limiteinf:limitesup]
/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:238:
VisibleDeprecationWarning: using a non-integer number instead of an integer
will result in an error in the future
threshold = 0.5 * (sorted_input[ia + limiteinf]
/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:239:
VisibleDeprecationWarning: using a non-integer number instead of an integer
will result in an error in the future
+ sorted_input[ia + limiteinf + 1])
................/usr/lib/python2.7/dist-packages/numpy/lib/function_base.py:2569:
RuntimeWarning: invalid value encountered in true_divide
c /= stddev[:, None]
/usr/lib/python2.7/dist-packages/numpy/lib/function_base.py:2570:
RuntimeWarning: invalid value encountered in true_divide
c /= stddev[None, :]
......................................................../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:407:
FutureWarning: elementwise comparison failed; returning scalar instead, but in
the future will perform elementwise comparison
idx = paradigm.onset[paradigm.con_id == 0].astype(np.int)
/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:407:
VisibleDeprecationWarning: using a boolean instead of an integer will result
in an error in the future
idx = paradigm.onset[paradigm.con_id == 0].astype(np.int)
../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:429:
FutureWarning: elementwise comparison failed; returning scalar instead, but in
the future will perform elementwise comparison
idx = bp.onset[bp.con_id == 1].astype(np.int)
/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:429:
VisibleDeprecationWarning: using a boolean instead of an integer will result
in an error in the future
idx = bp.onset[bp.con_id == 1].astype(np.int)
............/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/glm.py:581:
UserWarning: Contrast for session 1 is null
warn('Contrast for session %d is null' % i)
....................S.............................../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_utils.py:212:
VisibleDeprecationWarning: using a non-integer number instead of an integer
will result in an error in the future
z1s = np.zeros((np.round(1./dt)))
......................................
======================================================================
ERROR: nipy.io.tests.test_image_io.test_badfile
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File
"/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/io/tests/test_image_io.py",
line 44, in test_badfile
assert_raises(ImageFileError, load_image, filename)
File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 1145, in
assert_raises
return nose.tools.assert_raises(*args,**kwargs)
File "/usr/lib/python2.7/unittest/case.py", line 473, in assertRaises
callableObj(*args, **kwargs)
File
"/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/io/files.py",
line 57, in load
img = nib.load(filename)
File "/usr/lib/python2.7/dist-packages/nibabel/loadsave.py", line 40, in load
raise FileNotFoundError("No such file: '%s'" % filename)
FileNotFoundError: No such file: 'bad_file.foo'
----------------------------------------------------------------------
Ran 4535 tests in 252.382s
FAILED (SKIP=5, errors=1)
debian/rules:57: recipe for target 'test' failed
make[1]: *** [test] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149'
debian/rules:19: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
It also fails in the reproducible builds autobuilders, so it's not a random
thing.
Thanks.
--- End Message ---
--- Begin Message ---
Source: nipy
Source-Version: 0.4.0+git26-gf8d3149-2
We believe that the bug you reported is fixed in the latest version of
nipy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 836...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated nipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 04 Sep 2016 10:18:55 -0400
Source: nipy
Binary: python-nipy python-nipy-lib python-nipy-lib-dbg python-nipy-doc
Architecture: source all amd64
Version: 0.4.0+git26-gf8d3149-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Yaroslav Halchenko <deb...@onerussian.com>
Description:
python-nipy - Analysis of structural and functional neuroimaging data
python-nipy-doc - documentation and examples for NiPy
python-nipy-lib - Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg - Analysis of structural and functional neuroimaging data
Closes: 836538
Changes:
nipy (0.4.0+git26-gf8d3149-2) unstable; urgency=medium
.
* debian/pathes picked up few fixes from upstream adjusting
some tests for compatibility
- 78ced182c4b4583c9a2ed3c1fc01764941560c72
TST: relax test precision a little for 32-bit
(replaces "custom" up_relax_assumption patch)
- 32cb61eab2e92525c2497294d3be40e361507c4e (fixed failing doctest)
- 751531a2894e69383f75e6a9b97586e74759ab1b
BF: allow for generic IOError-based exception to be thrown when
loading non existing file (Closes: #836538)
* .gitignore, debian/source/options
- to not ignore .diff files since interfers with helper to CP
them from upstream
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nipy_0.4.0+git26-gf8d3149-2.debian.tar.xz
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nipy_0.4.0+git26-gf8d3149-2.dsc
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nipy_0.4.0+git26-gf8d3149-2.debian.tar.xz
c4bee515b53ef03fbaa49188210e1fae 2830120 doc extra
python-nipy-doc_0.4.0+git26-gf8d3149-2_all.deb
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python-nipy-lib-dbg-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb
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