Your message dated Fri, 05 Aug 2016 19:52:28 +0000
with message-id <e1bvlas-0003iq...@franck.debian.org>
and subject line Bug#831110: fixed in trinityrnaseq 2.2.0+dfsg-2
has caused the Debian Bug report #831110,
regarding trinityrnaseq: FTBFS with GCC 6: ./aligns/KmerAlignCore.cc:6:34:
fatal error: aligns/KmerAlignCore.h: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
831110: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=831110
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: trinityrnaseq
Version: 2.2.0+dfsg-1
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20160713 qa-ftbfs
Justification: FTBFS with GCC 6 on amd64
Hi,
During a rebuild of all packages in sid using the gcc-defaults package
available in experimental to make GCC default to version 6, your package failed
to build on amd64. For more information about GCC 6 and Stretch, see:
- https://wiki.debian.org/GCC6
- https://lists.debian.org/debian-devel-announce/2016/06/msg00007.html
Relevant part (hopefully):
> g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long
> -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual
> -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='"Mon May 23 18:46:45 UTC 2016"'
> -DMAKE_OS_RELEASE='"3.16.0-4-amd64"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE
> -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30
> -fno-strict-aliasing -mieee-fp -fopenmp -Wdate-time
> -D_FORTIFY_SOURCE=2 -c ./aligns/KmerAlignCore.cc -o
> obj/aligns/KmerAlignCore.o
> ./aligns/KmerAlignCore.cc:6:34: fatal error: aligns/KmerAlignCore.h: No such
> file or directory
> #include "aligns/KmerAlignCore.h"
> ^
> compilation terminated.
> make[2]: *** [aligns/KmerAlignCore.o] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2016/07/13/trinityrnaseq_2.2.0+dfsg-1_unstable_gcc6.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: trinityrnaseq
Source-Version: 2.2.0+dfsg-2
We believe that the bug you reported is fixed in the latest version of
trinityrnaseq, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 831...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <sa...@debian.org> (supplier of updated trinityrnaseq package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 05 Aug 2016 19:21:49 +0000
Source: trinityrnaseq
Binary: trinityrnaseq trinityrnaseq-examples
Architecture: source amd64 all
Version: 2.2.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
trinityrnaseq - RNA-Seq De novo Assembly
trinityrnaseq-examples - RNA-Seq De novo Assembly common example and testing
files
Closes: 831110
Changes:
trinityrnaseq (2.2.0+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Fix build on GCC 6 (Closes: #831110)
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Files:
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trinityrnaseq-dbgsym_2.2.0+dfsg-2_amd64.deb
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trinityrnaseq-examples_2.2.0+dfsg-2_all.deb
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trinityrnaseq_2.2.0+dfsg-2_amd64.deb
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