Source: trinityrnaseq Version: 2.2.0+dfsg-1 Severity: serious Tags: stretch sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20160713 qa-ftbfs Justification: FTBFS with GCC 6 on amd64
Hi, During a rebuild of all packages in sid using the gcc-defaults package available in experimental to make GCC default to version 6, your package failed to build on amd64. For more information about GCC 6 and Stretch, see: - https://wiki.debian.org/GCC6 - https://lists.debian.org/debian-devel-announce/2016/06/msg00007.html Relevant part (hopefully): > g++ -W -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long > -fno-nonansi-builtins -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual > -Wendif-labels -O3 -ggdb3 -DMAKE_DATE='"Mon May 23 18:46:45 UTC 2016"' > -DMAKE_OS_RELEASE='"3.16.0-4-amd64"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE > -imacros system/BigFileDefines.h -pthread -ftemplate-depth-30 > -fno-strict-aliasing -mieee-fp -fopenmp -Wdate-time > -D_FORTIFY_SOURCE=2 -c ./aligns/KmerAlignCore.cc -o > obj/aligns/KmerAlignCore.o > ./aligns/KmerAlignCore.cc:6:34: fatal error: aligns/KmerAlignCore.h: No such > file or directory > #include "aligns/KmerAlignCore.h" > ^ > compilation terminated. > make[2]: *** [aligns/KmerAlignCore.o] Error 1 The full build log is available from: http://people.debian.org/~lucas/logs/2016/07/13/trinityrnaseq_2.2.0+dfsg-1_unstable_gcc6.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
