Your message dated Thu, 10 Mar 2016 10:19:42 +0000 with message-id <e1adxh0-0005nf...@franck.debian.org> and subject line Bug#817188: fixed in bamtools 2.4.0+dfsg-6 has caused the Debian Bug report #817188, regarding libbamtools-doc: fails to upgrade from 'testing' - trying to overwrite /usr/share/doc/libbamtools-dev/html/functions_v.html to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 817188: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=817188 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libbamtools-doc Version: 2.4.0+dfsg-4 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'testing'. It installed fine in 'testing', then the upgrade to 'sid' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package libbamtools-doc. Preparing to unpack .../libbamtools-doc_2.4.0+dfsg-4_all.deb ... Unpacking libbamtools-doc (2.4.0+dfsg-4) ... dpkg: error processing archive /var/cache/apt/archives/libbamtools-doc_2.4.0+dfsg-4_all.deb (--unpack): trying to overwrite '/usr/share/doc/libbamtools-dev/html/functions_v.html', which is also in package libbamtools-dev 2.4.0+dfsg-3+b1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libbamtools-doc_2.4.0+dfsg-4_all.deb cheers, Andreas
libbamtools-dev=2.4.0+dfsg-3+b1_libbamtools-doc=2.4.0+dfsg-4.log.gz
Description: application/gzip
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--- Begin Message ---Source: bamtools Source-Version: 2.4.0+dfsg-6 We believe that the bug you reported is fixed in the latest version of bamtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 817...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <cru...@ucdavis.edu> (supplier of updated bamtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 10 Mar 2016 01:38:21 -0800 Source: bamtools Binary: bamtools libbamtools-dev libbamtools2.4.0 libbamtools-doc Architecture: source Version: 2.4.0+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <cru...@ucdavis.edu> Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment) libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files Closes: 817188 Changes: bamtools (2.4.0+dfsg-6) unstable; urgency=medium . * Whoops, forgot the '+dfsg' in my fix for the movement of the development docs into their own -doc package. Thanks go to Andreas Beckmann <a...@debian.org> for his patience and help. (Closes: 817188) Checksums-Sha1: 1ac5cc6a50cb47d1b21d7473782974ecfaec368e 2318 bamtools_2.4.0+dfsg-6.dsc 975087cf228f8d02ab75b60b8670331777b47f66 11784 bamtools_2.4.0+dfsg-6.debian.tar.xz Checksums-Sha256: 2816be9758dd00638b6d67e7b1d0ba356fb19f36431d5d8017c54b639e2259e2 2318 bamtools_2.4.0+dfsg-6.dsc 77be240628229c6ab790da5f515848cd5455211c63dbeaf5fa3d6619c2983311 11784 bamtools_2.4.0+dfsg-6.debian.tar.xz Files: 1e1dc193cfc9ef9ab63d969ed9b0309a 2318 science extra bamtools_2.4.0+dfsg-6.dsc d41adf6d69938ab62859ff07d3fe2181 11784 science extra bamtools_2.4.0+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIcBAEBCgAGBQJW4UDWAAoJEDwmdj9sZ+biM7kQALFiABu6raO1/PcuYGkviBua PDDAxoDv1fAfN6pMLZvtRKq6fl6DG6Whmj24DieXaSFvcVNmmjcQXPyUrIcShfia o8doRxkSRBfEIUAyqUptYusRs3ElU9kkGa0I+Dm7Laa2/EydJBdZMFbrz/YSIgdv bMa4Kbb81+mx8cCdTpnyQaqzWzxsEHS0fEGu7iTMWBy5bWMgYP+EKIMErVkQzpn1 N1L8VcByL02gvQQ+pfE2pq0/L4Kml7JY6AjbPnIRykP9FHI+ndIdaoJghAhnYb0J z0JL7q5vfg0XDJmFyOvKHMhrS7gKgQNi/LYWIFckg5zmKdyQtrsYr3LMdOsaE2fN /ehIqZS2rV/QCU6Db3OpKbBZbL+9zh/bwoDy0E4J4JLK8Js2gFJp0tOC4aaZi/JB hopaofMbAIf4EH1uSRCJZ5lVjkUfHFXZI9bAdjUwHBfDPqDkejdyOggbXjkwaYB0 qULMSU9al/pWBUdCHpUwKSHPbweMum+IcvMRH3dUlrGg5axNPn8sq8uqzDNf/L+V 1VuZI/XecKtK/wzliTtZIACtdg8TJIU5ci2xfu/vd9inNJt2zjetH/icUvUFCKSZ rYZ6ceFK8waaWZsM9wfeIcKuBuI3tYyGe7mmjlcKzvYJ2yZJfgCFOb02SoEIhyH7 uOYd153uY9WzyHYMg4fR =iNcd -----END PGP SIGNATURE-----
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