Your message dated Wed, 09 Mar 2016 10:41:55 +0000 with message-id <e1adbyx-0002w1...@franck.debian.org> and subject line Bug#817188: fixed in bamtools 2.4.0+dfsg-5 has caused the Debian Bug report #817188, regarding libbamtools-doc: fails to upgrade from 'testing' - trying to overwrite /usr/share/doc/libbamtools-dev/html/functions_v.html to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 817188: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=817188 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libbamtools-doc Version: 2.4.0+dfsg-4 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'testing'. It installed fine in 'testing', then the upgrade to 'sid' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package libbamtools-doc. Preparing to unpack .../libbamtools-doc_2.4.0+dfsg-4_all.deb ... Unpacking libbamtools-doc (2.4.0+dfsg-4) ... dpkg: error processing archive /var/cache/apt/archives/libbamtools-doc_2.4.0+dfsg-4_all.deb (--unpack): trying to overwrite '/usr/share/doc/libbamtools-dev/html/functions_v.html', which is also in package libbamtools-dev 2.4.0+dfsg-3+b1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libbamtools-doc_2.4.0+dfsg-4_all.deb cheers, Andreas
libbamtools-dev=2.4.0+dfsg-3+b1_libbamtools-doc=2.4.0+dfsg-4.log.gz
Description: application/gzip
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--- Begin Message ---Source: bamtools Source-Version: 2.4.0+dfsg-5 We believe that the bug you reported is fixed in the latest version of bamtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 817...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <cru...@ucdavis.edu> (supplier of updated bamtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 09 Mar 2016 00:58:33 -0800 Source: bamtools Binary: bamtools libbamtools-dev libbamtools2.4.0 libbamtools-doc Architecture: source Version: 2.4.0+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <cru...@ucdavis.edu> Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment) libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files Closes: 817188 Changes: bamtools (2.4.0+dfsg-5) unstable; urgency=medium . * Fix the movement of the development docs into their own -doc package (Closes: 817188) * Fix another typo in upstream Checksums-Sha1: 4220a6b65062ea4eb694a90f151061239c0662a5 2318 bamtools_2.4.0+dfsg-5.dsc 1133f9dde88091f3f202da1b589c73f0e2141271 11708 bamtools_2.4.0+dfsg-5.debian.tar.xz Checksums-Sha256: c356868bb20370080be8b62bae11161e88628cd8d5aae79cdeb4b6eccb54a5fe 2318 bamtools_2.4.0+dfsg-5.dsc a3273aa4f105c77426d338797ab14d3e1d07caf9d98ed51746078890cad8deb6 11708 bamtools_2.4.0+dfsg-5.debian.tar.xz Files: 41eaa8030d9de6296f0c6b1d8e6a6313 2318 science extra bamtools_2.4.0+dfsg-5.dsc 3daa4247ea3dd92a07f745b94e91d975 11708 science extra bamtools_2.4.0+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIcBAEBCgAGBQJW3+ghAAoJEDwmdj9sZ+bil80QAKSg4jC4UFCLq4ZOIDpWBNoL 2cKjKQqpXfIwpQKO1I7k90rREOio6mO0HH7vIjEzfeKh12wnBXg/FO4tzzvPyK8l mDFrofBvJe3Ah6m2j8nU6CHureyqAziPQUe1OO5cqU+NFmVLEN9AGuEomQUqNkeW xlT1NPAKUcmrK/z/M4TEqQaV9Z9YJ7OUGilmwA1pcEUQKgmqv6D/XKfVzy221Ypv 7U5ithni3RNoF6PE8a7x/oWs27LpHRGOuM5Nj83Ny3oMkyui8EoE2P0uKycwzjD8 NkL35BaRwEXdWfepAHeYyr8wn4QYQ/+8Lf+llUjaaQslQJpo/6SFIug+XH7btNg2 wg+Ly20aP5c+CFqW9JPXb1OSUYdJ+fAn0RrTf0XFlKgdk+jJ66t6y9nrV9fMYd45 9ouVcIhaOSFUbZ3u/yIC39HFoDkghJ6nHz1A3mDdyy9PWELcKKSuPNigXsm7uWNs QKTE5kvP0I+ebKMfotc/uqz3rmZYKfyoB6DqwZ/o+xNOY/n8nLtmkk5Wl9MJsQqZ YlI0Hbr9g2Uh/z9sTNRmR6/T67TdgiRKZAUor0K2FfX5bRYRjOXIjLtA+SkQNAiO 2ikJ6L/3ONo5I6ya0Trhv2ErxHHmwivRdGmoD4LN5ZmPZPoPJVHhF1PfpnMwOVYz Qfb39DTRegPQ/2Ms6XGo =LxML -----END PGP SIGNATURE-----
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