Your message dated Mon, 22 Feb 2016 11:32:48 +0000 with message-id <e1axojq-0005yz...@franck.debian.org> and subject line Bug#815176: fixed in staden 2.0.0+b10-3 has caused the Debian Bug report #815176, regarding staden: Gap4 contig editor does not show sequences to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 815176: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=815176 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: staden Version: 2.0.0+b10-1.1 Severity: grave Justification: renders package unusable Dear Maintainer, I loaded pregap-converted *.exp sequences into gap4 to do an assembly. The assembly worked out, but I cannot open the contig editor for proofreading. More correctly described: It actually opens, but only the upper window bar is visible, neither sequences nor trace files are displayed. Since no information on this problem shows up in the log files of gap4, I have got no idea concerning the nature of the problem. Perhaps something connected to the graphical surface? Before upgrading to jessie, I had staden from the sourceforge site installed and it worked, but under jessie I have got the problem with both, the debian and with the sourceforge package. Kerstin -- System Information: Debian Release: 8.3 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: i386 (i686) Kernel: Linux 3.2.0-4-686-pae (SMP w/2 CPU cores) Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages staden depends on: ii libc6 2.19-18+deb8u3 ii libcurl3 7.38.0-4+deb8u3 ii libfontconfig1 2.11.0-6.3 ii libfreetype6 2.5.2-3+deb8u1 ii libgcc1 1:4.9.2-10 ii liblzma5 5.1.1alpha+20120614-2+b3 ii libpng12-0 1.2.50-2+deb8u2 ii libstaden-read1 1.13.7-1 ii libstdc++6 4.9.2-10 ii libtcl8.6 8.6.2+dfsg-2 ii libtk8.6 8.6.2-1 ii libx11-6 2:1.6.2-3 ii libxext6 2:1.3.3-1 ii libxft2 2.3.2-1 ii libxss1 1:1.2.2-1 ii staden-common 2.0.0+b10-1.1 ii staden-io-lib-utils 1.13.7-1 ii tklib 0.6-1 ii zlib1g 1:1.2.8.dfsg-2+b1 staden recommends no packages. Versions of packages staden suggests: pn staden-doc <none> -- no debconf information
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--- Begin Message ---Source: staden Source-Version: 2.0.0+b10-3 We believe that the bug you reported is fixed in the latest version of staden, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 815...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated staden package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 22 Feb 2016 11:37:10 +0100 Source: staden Binary: staden staden-common Architecture: source all amd64 Version: 2.0.0+b10-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: staden - DNA sequence assembly (Gap4/Gap5), editing and analysis tools staden-common - Architecture independent files for Staden Closes: 815176 Changes: staden (2.0.0+b10-3) unstable; urgency=medium . * Upstream provided patch to deal with modern windowmanagers Closes: #815176 Checksums-Sha1: 85dde595105d76844fbce2e3710bdf7437c7b8c3 2212 staden_2.0.0+b10-3.dsc 57560615ce25c89a795f50ca787932508c7af674 15616 staden_2.0.0+b10-3.debian.tar.xz 8b707cb2de8fa5a5a28214dcc16b01813db37b2f 1938618 staden-common_2.0.0+b10-3_all.deb c738c6f28b1c8663993f0734fb50e523fd87ada5 4367368 staden-dbgsym_2.0.0+b10-3_amd64.deb f9526dc966ae0960dc0dff5104d49e8eef4f2917 1569854 staden_2.0.0+b10-3_amd64.deb Checksums-Sha256: 532c8cabb92f2180b5ea923963b80be74fa4c77781cc2f7cc0f5347b4f117f75 2212 staden_2.0.0+b10-3.dsc d4243de60fa9a8a1500277b565039db38624429e4602b195b686f42bae52cc50 15616 staden_2.0.0+b10-3.debian.tar.xz b1ea8969c21343343abc17af57be9c66285c1bab22112b493a41e7338ac89e6c 1938618 staden-common_2.0.0+b10-3_all.deb 64985bf8c5ad18d15c1ef9f1a6b3e40be866ece6a38f3cc88c5a507e9750f276 4367368 staden-dbgsym_2.0.0+b10-3_amd64.deb 4565f48e567b4863dd146e3a479d13ae6b5f51f4e6cb448cf6eea6c7715f33f4 1569854 staden_2.0.0+b10-3_amd64.deb Files: b6c6a361378ae2f2984c03007d827075 2212 science optional staden_2.0.0+b10-3.dsc 1cf05b29b4b92964d09676689af6875f 15616 science optional staden_2.0.0+b10-3.debian.tar.xz 7b3d9ee85c80b7abd976d319b051f6fd 1938618 science optional staden-common_2.0.0+b10-3_all.deb 16212a595f8010d045208bc47caffe05 4367368 debug extra staden-dbgsym_2.0.0+b10-3_amd64.deb 9976e2b92501ceec33acfc01a47f6a43 1569854 science optional staden_2.0.0+b10-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWyuZPAAoJEFeKBJTRxkbR5mIQAIO5sB374HXgloj4AbVRHTMP kjksrA4DiCpYm2XfMw7pViPBm83X+2oNmBu1HSrmLjUrseFm88hK0MmOSDMWdv2y NmgSPvhrIv2UIRuG3+yXvladBEa9ngAWqLhK2JHtnESDRi208bKY4SARPLk37+t2 qQBFGcWCx5jfMkMcTaqY7NG5Dzj3a55I2fLix2FDHrQEeBUgIzNtzEpuABZOoCox kkUax4DeVx4ti6KxNclfZXley7P0lCer5AUzJ4u58Fj0Pn3YwNa+9TxHkwQSyAns poJZNaD5Q9oxd2tGy0IG+5m61v9ryOV5j9v5Frxs3NBGcUiekNKH23mU8IZBm20R f1F7YVwgBT3+LGBLtDjFTWmWUXDVdhWgx0YE2lEVoKgux0Z0JBbHq0rcmPYiqjJJ ntFdqAwr4V7zxqP9zga2cG2GYRNi3QC/StIbSprs4p3QjyUJLaEpbEzACeytHeKe R/S2cSvnB8iKteWhusjCQ5S/A95XKsS2SYn5C8W+DaRF1keDENoo/G1cnpSucqnc LbChSSSRJ/WzexF2Ji353EKjV1+nzn6lYHbf6m2QJH7G/R/cJ4UxkDph2g6VDv1D UuBtnlXvLUxVjfODBP/SIWXPAMYQO+JiJv0nVRqaiX7hv/oCP7nzNX42r4czyx7A BFb7wYzjerxls30VLgR9 =VoDQ -----END PGP SIGNATURE-----
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