Your message dated Sat, 28 Nov 2015 00:20:07 +0000 with message-id <e1a2tfh-0004gz...@franck.debian.org> and subject line Bug#805687: fixed in python-pbcore 1.2.6+dfsg-1 has caused the Debian Bug report #805687, regarding python-pbcore: FTBFS: AttributeError: 'pysam.csamfile.Samfile' object has no attribute '_hasIndex' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 805687: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=805687 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-pbcore Version: 1.2.4+dfsg-1 Severity: serious Justification: fails to build from source Tags: sid stretch User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, The package fails to build: ====================================================================== ERROR: test_pbcore_io_AlnFileReaders.TestBasicBam.testBasicOperations ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/python-pbcore-1.2.4+dfsg/tests/test_pbcore_io_AlnFileReaders.py", line 42, in testBasicOperations EQ(False, self.f.isEmpty) File "/python-pbcore-1.2.4+dfsg/pbcore/io/align/BamIO.py", line 282, in isEmpty return (len(self) == 0) File "/python-pbcore-1.2.4+dfsg/pbcore/io/align/BamIO.py", line 54, in f if not bamReader.peer._hasIndex(): AttributeError: 'pysam.csamfile.Samfile' object has no attribute '_hasIndex' ---------------------------------------------------------------------- Ran 252 tests in 24.262s FAILED (errors=1, skipped=14) E: pybuild pybuild:274: test: plugin custom failed with: exit code=1: python2.7 setup.py test Full build log: https://reproducible.debian.net/rb-pkg/unstable/amd64/python-pbcore.html -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64)
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--- Begin Message ---Source: python-pbcore Source-Version: 1.2.6+dfsg-1 We believe that the bug you reported is fixed in the latest version of python-pbcore, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 805...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Afif Elghraoui <a...@ghraoui.name> (supplier of updated python-pbcore package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 27 Nov 2015 12:19:10 -0800 Source: python-pbcore Binary: python-pbcore python-pbcore-doc Architecture: source all Version: 1.2.6+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@ghraoui.name> Description: python-pbcore - Python library for processing PacBio data files python-pbcore-doc - Python library for processing PacBio data files (documentation) Closes: 805687 Changes: python-pbcore (1.2.6+dfsg-1) unstable; urgency=medium . * Set watch file to point to pypi rather than github * Imported Upstream version 1.2.6+dfsg * Refresh patches * Fix compatibility with pysam 0.8.4 (Closes: #805687) * Add license statement for a file added in-between releases Checksums-Sha1: 8429bd253510444f00826b5586dcb18433ea341d 2239 python-pbcore_1.2.6+dfsg-1.dsc 41a698c6ed6198993abc44dfd0b7aacabfd0175b 9945326 python-pbcore_1.2.6+dfsg.orig.tar.gz f40612d05d2b9210d8f483a458405711a644865d 5972 python-pbcore_1.2.6+dfsg-1.debian.tar.xz 62c44dc6b161f2f040b9985049dae38ff461a661 44952 python-pbcore-doc_1.2.6+dfsg-1_all.deb a97fc188957989509fc9095e56a6e9494233a4f2 9089962 python-pbcore_1.2.6+dfsg-1_all.deb Checksums-Sha256: 9b5866017206bc8e889aeeef63e83f823dc831854e7c7aa8368f67219a00fc3e 2239 python-pbcore_1.2.6+dfsg-1.dsc 01c9675efa240bfcbecb8597e8d1e69fb30bb8a812488ad23617827e182a532c 9945326 python-pbcore_1.2.6+dfsg.orig.tar.gz bee3a889ce774aad03b944b02af4404f49d47101812dd8b4a0a4382d043202c9 5972 python-pbcore_1.2.6+dfsg-1.debian.tar.xz 663a303d8cbfe73e8cfe143bcaa7ed4250d91851311faf8ff9f59fd58f74ea9d 44952 python-pbcore-doc_1.2.6+dfsg-1_all.deb 93294f357e9c7a2eb75bd9c0f64a76d663ae2b1b003e802e05b5af2e76d5b5fb 9089962 python-pbcore_1.2.6+dfsg-1_all.deb Files: 7e5884a6585851b1c09e9800fbe73f37 2239 python optional python-pbcore_1.2.6+dfsg-1.dsc 1f562c35f6223d749063a766ca8997d2 9945326 python optional python-pbcore_1.2.6+dfsg.orig.tar.gz 8f4f05627a6da898c283d2fee3d0d237 5972 python optional python-pbcore_1.2.6+dfsg-1.debian.tar.xz 93eb46f3c4acb4e196076a826d76cef6 44952 doc optional python-pbcore-doc_1.2.6+dfsg-1_all.deb 7f822aa6b608d5567432a3df7c1d4b43 9089962 python optional python-pbcore_1.2.6+dfsg-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWWO+HAAoJEM6uatOv6Cb7xuYP/2b3nzfqdQGeXU1utv+DJLnd i4BJ8NVCy6YZm27y3lKR74er3dVL+cbRFQpBjP3OHlxUyi7EwItFJVJ0GYdn4EoA HoQhsjidrEfIrzfeVJH7DHq/LfVyog9UMRC+5BkQ6hGojmpl4yiyqIC3QvH/HYAW px+IJnGsW7oQPYS4Vrg8+07jGBcGr+MgoYFmJnYonF6f1zCRKL3hUJWSdbmrRWlo fT15jfwma2mIz7dABgunC7wGYXxcSWghBIVSYxoG2V5McHQQOLzw1cCfPGkjal+R Y9iLYn0gUl41LjJXQQf1AjewIpoMCrSSlHz2Cm6/amBwAC7s9qdgM9yzGv14UufJ cDiGcbyOmofc8oz0wYIAI/6RjKA4H1XJZFegZfJNrjwui5T7KZbGF6XwrBwici5L EZPhzXphGi1jxJmnlHIJy7POC1RMvth1eGQJTyyaheWReBBlsxHZ2zsXhx0r5Z4T sXQS7wUWv9qjgkPtw9YovfHTDaC4/U1H5vUPo0XaOwXMMZuDpK6WnGbP2YLDoFdQ ihs31R/cEkXCk+a04KpBhN7vHAVKmxNx8yFIanO3nm1qYn/GvUsc12EWWAU/R+pt i+Neb0EJ0glQaVYrghP9A3MDLt/ddorWYqD0eonqyLkIsDd5XwK9TzzC+c9oAUNb 4+sbrNAc8qR8Q1RyNslc =TQFG -----END PGP SIGNATURE-----
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