Source: python-pbcore
Version: 1.2.4+dfsg-1
Severity: serious
Justification: fails to build from source
Tags: sid stretch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
The package fails to build:
======================================================================
ERROR: test_pbcore_io_AlnFileReaders.TestBasicBam.testBasicOperations
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/python-pbcore-1.2.4+dfsg/tests/test_pbcore_io_AlnFileReaders.py", line
42, in testBasicOperations
EQ(False, self.f.isEmpty)
File "/python-pbcore-1.2.4+dfsg/pbcore/io/align/BamIO.py", line 282, in
isEmpty
return (len(self) == 0)
File "/python-pbcore-1.2.4+dfsg/pbcore/io/align/BamIO.py", line 54, in f
if not bamReader.peer._hasIndex():
AttributeError: 'pysam.csamfile.Samfile' object has no attribute '_hasIndex'
----------------------------------------------------------------------
Ran 252 tests in 24.262s
FAILED (errors=1, skipped=14)
E: pybuild pybuild:274: test: plugin custom failed with: exit code=1: python2.7
setup.py test
Full build log:
https://reproducible.debian.net/rb-pkg/unstable/amd64/python-pbcore.html
-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
