Your message dated Tue, 10 Nov 2015 22:24:29 +0000
with message-id <e1zwhl3-0004ap...@franck.debian.org>
and subject line Bug#804441: fixed in python-biom-format 2.1.4+dfsg-2
has caused the Debian Bug report #804441,
regarding python-biom-format: FTBFS: No such file or directory:
'[..]/build/examples/min_sparse_otu_table_hdf5.biom'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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immediately.)
--
804441: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804441
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biom-format
Version: 2.1.4+dfsg-1
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
python-biom-format fails to build from source in unstable/amd64:
[..]
======================================================================
ERROR: test_valid_hdf5_metadata_v210
(tests.test_commands.test_table_validator.TableValidatorTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py",
line 146, in skipper_func
return f(*args, **kwargs)
File
"/build/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_commands/test_table_validator.py",
line 62, in test_valid_hdf5_metadata_v210
format_version='2.1')
File "/usr/lib/python2.7/dist-packages/pyqi/core/command.py", line
137, in __call__
result = self.run(**kwargs)
File "biom/commands/table_validator.py", line 73, in run
is_json = not is_hdf5_file(kwargs['table'])
File "biom/util.py", line 507, in is_hdf5_file
with open(fp) as f:
IOError: [Errno 2] No such file or directory:
'/build/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/examples/min_sparse_otu_table_hdf5.biom'
----------------------------------------------------------------------
Ran 252 tests in 2.720s
FAILED (SKIP=1, errors=3)
E: pybuild pybuild:274: test: plugin distutils failed with: exit
code=1: cd
/build/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build;
python2.7 -m nose tests
dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir .
returned exit code 13
debian/rules:20: recipe for target 'build' failed
make: *** [build] Error 25
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/python-biom-format_2.1.4+dfsg-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
python-biom-format.2.1.4+dfsg-1.unstable.amd64.log.txt.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: python-biom-format
Source-Version: 2.1.4+dfsg-2
We believe that the bug you reported is fixed in the latest version of
python-biom-format, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 804...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-biom-format
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 10 Nov 2015 22:35:15 +0100
Source: python-biom-format
Binary: python-biom-format
Architecture: source amd64
Version: 2.1.4+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-biom-format - Biological Observation Matrix (BIOM) format
Closes: 804441
Changes:
python-biom-format (2.1.4+dfsg-2) unstable; urgency=medium
.
* Fix test target
Closes: #804441
* Fix clean target enabling building twice in a row
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