Source: python-biom-format Version: 2.1.4+dfsg-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
python-biom-format fails to build from source in unstable/amd64:
[..]
======================================================================
ERROR: test_valid_hdf5_metadata_v210
(tests.test_commands.test_table_validator.TableValidatorTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py",
line 146, in skipper_func
return f(*args, **kwargs)
File
"/build/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_commands/test_table_validator.py",
line 62, in test_valid_hdf5_metadata_v210
format_version='2.1')
File "/usr/lib/python2.7/dist-packages/pyqi/core/command.py", line
137, in __call__
result = self.run(**kwargs)
File "biom/commands/table_validator.py", line 73, in run
is_json = not is_hdf5_file(kwargs['table'])
File "biom/util.py", line 507, in is_hdf5_file
with open(fp) as f:
IOError: [Errno 2] No such file or directory:
'/build/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build/examples/min_sparse_otu_table_hdf5.biom'
----------------------------------------------------------------------
Ran 252 tests in 2.720s
FAILED (SKIP=1, errors=3)
E: pybuild pybuild:274: test: plugin distutils failed with: exit
code=1: cd
/build/python-biom-format-2.1.4+dfsg/.pybuild/pythonX.Y_2.7/build;
python2.7 -m nose tests
dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir .
returned exit code 13
debian/rules:20: recipe for target 'build' failed
make: *** [build] Error 25
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/python-biom-format_2.1.4+dfsg-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
python-biom-format.2.1.4+dfsg-1.unstable.amd64.log.txt.gz
Description: application/gzip
