Your message dated Sun, 16 Aug 2015 15:19:57 +0000 with message-id <e1zqzj3-0005ct...@franck.debian.org> and subject line Bug#795685: fixed in biojava4-live 4.1.0+dfsg-2 has caused the Debian Bug report #795685, regarding biojava4-live: FTBFS: UnknownHostException: eutils.ncbi.nlm.nih.gov to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 795685: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=795685 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: biojava4-live Version: 4.1.0+dfsg-1 Severity: serious Justification: fails to build from source Tags: sid stretch User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, The package fails to build without networking, which we believe is a policy violation. Ubuntu may have a patch, as they also enforce this: [junit] Running org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReaderTest [junit] Testsuite: org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReaderTest [junit] Tests run: 16, Failures: 0, Errors: 8, Skipped: 0, Time elapsed: 0.095 sec [junit] Tests run: 16, Failures: 0, Errors: 8, Skipped: 0, Time elapsed: 0.095 sec [junit] ------------- Standard Error ----------------- [junit] SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". [junit] SLF4J: Defaulting to no-operation (NOP) logger implementation [junit] SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [junit] ------------- ---------------- --------------- [junit] [junit] Testcase: testProteinSequenceFactoring[0] took 0.038 sec [junit] Caused an ERROR [junit] eutils.ncbi.nlm.nih.gov [junit] java.net.UnknownHostException: eutils.ncbi.nlm.nih.gov [junit] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:178) ... [junit] at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1301) [junit] at org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.getEutilsInputStream(GenbankProxySequenceReader.java:141) [junit] at org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.getBufferedInputStream(GenbankProxySequenceReader.java:109) [junit] at org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.<init>(GenbankProxySequenceReader.java:83) [junit] at org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReaderTest.testProteinSequenceFactoring(GenbankProxySequenceReaderTest.java:84) [junit] [junit] Testcase: testFeatures[0] took 0 sec [junit] Testcase: testProteinSequenceFactoring[1] took 0.001 sec [junit] Caused an ERROR [junit] eutils.ncbi.nlm.nih.gov [junit] java.net.UnknownHostException: eutils.ncbi.nlm.nih.gov -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---Source: biojava4-live Source-Version: 4.1.0+dfsg-2 We believe that the bug you reported is fixed in the latest version of biojava4-live, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 795...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Olivier Sallou <osal...@debian.org> (supplier of updated biojava4-live package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 16 Aug 2015 16:33:47 +0200 Source: biojava4-live Binary: libbiojava4.0-java libbiojava4-java libbiojava4-java-doc Architecture: source all Version: 4.1.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: libbiojava4-java - Java API to biological data and applications (default version) libbiojava4-java-doc - [Biology] Documentation for BioJava libbiojava4.0-java - Java API to biological data and applications (version 4) Closes: 795685 Changes: biojava4-live (4.1.0+dfsg-2) unstable; urgency=medium . * Remove some network related tests (Closes: #795685). Checksums-Sha1: fc4b183f97815ed5ab0cb129581bbd1a7ad1ecc4 2632 biojava4-live_4.1.0+dfsg-2.dsc eb38b63b3bc676fbafbe6504b00501a5749ca47d 12304 biojava4-live_4.1.0+dfsg-2.debian.tar.xz 52e2a74b433c28af64fd77e8070e6b338026cd59 1524076 libbiojava4-java-doc_4.1.0+dfsg-2_all.deb 25e8b42c02a38309f9e9ec985f59d26b9f304a87 3258 libbiojava4-java_4.1.0+dfsg-2_all.deb 83626a06ade9c729ea616c0a026bbb7b876cf601 5022672 libbiojava4.0-java_4.1.0+dfsg-2_all.deb Checksums-Sha256: b92e36d1a4fe0a638de7d3d61d255a61a8e8573fac256c7f834ff060544b8f1c 2632 biojava4-live_4.1.0+dfsg-2.dsc fe0662c00758e0a2420536746fd663efee6f71de1deddc977d84d974110ab7b2 12304 biojava4-live_4.1.0+dfsg-2.debian.tar.xz 1f2cb6ae4255b98ecc316b8d7b775ffcbbee1704a38daf8c22ba08cf39d058c2 1524076 libbiojava4-java-doc_4.1.0+dfsg-2_all.deb 32b5a716958467df2e4d46e07e1728f07d3adce136c69828c3a4b7e6259f50db 3258 libbiojava4-java_4.1.0+dfsg-2_all.deb 533c7fc79afc8b9b8cb02aaf0ea6fa2904175f771ffb2381c0f6036ecfb9c7da 5022672 libbiojava4.0-java_4.1.0+dfsg-2_all.deb Files: 52d0112c910be470c09fe85818cf4afe 2632 java optional biojava4-live_4.1.0+dfsg-2.dsc 07cfc01b4cd5ae998cb277909627dd4d 12304 java optional biojava4-live_4.1.0+dfsg-2.debian.tar.xz a53f75ae5fb312ba4c850b852bfa382f 1524076 doc optional libbiojava4-java-doc_4.1.0+dfsg-2_all.deb 7dd5684b40a0a4059bcd6235d005b0ca 3258 java optional libbiojava4-java_4.1.0+dfsg-2_all.deb 8da242cdada81fbbd6782d4601e0b8ce 5022672 java optional libbiojava4.0-java_4.1.0+dfsg-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJV0KKLAAoJEHjcaNsybYQ4wMgP/2CMVVDIYShVSr7VNnSN6Gmi WYTvOsWL4hUKhAmohbgG4wI6r9KyWyWZIfCgTMyyqEMOF6fHGGWRpVqfjZNt+krB ejE6fH3lRzZNTrJvLIx1UkKUGZwv92XlLBWlK1Mscj9W40hdD0hMjWjun6+s4scu HMuP1OVJ/itUA0ZMpra+nvkfn1khCxDhgLXQO3VfylFbcJSgKWtvDAr938L1//JI qE72MPYy2+LtB44OAbsookSTydxcLQEy16k2W2fcD7hGPyDttPUoBfSAkSwifh07 1qvdUHn/VhR3U1pUrKu4459ZBbqidSt5lJtt/8YBcEKcGMXysHLrZU1nKjunWbqW AOM6dD5FeD+r2PHwzzyYhGvTo6Rz9KCM7Q4W+PXopTqHQ958d7z/cClaCQcUTY2i 12hHEYTEw7SNc8N0X87zrIpQ7WGNJ8Y2RgGedhx0MwwGp0ws7/+WNcPCzWD6syZN JR9eG3Jeye0vRb2qxo/RkeYdutuhmiH24o6E94plII+lcwXaq82QqTqKzCz456LT MqafyGaGkbYdWq4TL91yxakVKaC4ie7TRP8VD9R5ccstttXg48C6hxJkmuYrZFQQ buovjmozkzbybIAGLk+oo6UFTNOL6pPhR3v43ReSeSro+o9niCm2zxo6+4yhwsPX jc+Nr7/Dqeb9S6SQziuW =DMjB -----END PGP SIGNATURE-----
--- End Message ---
