Source: biojava4-live
Version: 4.1.0+dfsg-1
Severity: serious
Justification: fails to build from source
Tags: sid stretch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-CC: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
The package fails to build without networking, which we believe is a
policy violation. Ubuntu may have a patch, as they also enforce this:
[junit] Running
org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReaderTest
[junit] Testsuite:
org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReaderTest
[junit] Tests run: 16, Failures: 0, Errors: 8, Skipped: 0, Time elapsed:
0.095 sec
[junit] Tests run: 16, Failures: 0, Errors: 8, Skipped: 0, Time elapsed:
0.095 sec
[junit] ------------- Standard Error -----------------
[junit] SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
[junit] SLF4J: Defaulting to no-operation (NOP) logger implementation
[junit] SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for
further details.
[junit] ------------- ---------------- ---------------
[junit]
[junit] Testcase: testProteinSequenceFactoring[0] took 0.038 sec
[junit] Caused an ERROR
[junit] eutils.ncbi.nlm.nih.gov
[junit] java.net.UnknownHostException: eutils.ncbi.nlm.nih.gov
[junit] at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:178)
...
[junit] at
sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1301)
[junit] at
org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.getEutilsInputStream(GenbankProxySequenceReader.java:141)
[junit] at
org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.getBufferedInputStream(GenbankProxySequenceReader.java:109)
[junit] at
org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReader.<init>(GenbankProxySequenceReader.java:83)
[junit] at
org.biojava.nbio.core.sequence.loader.GenbankProxySequenceReaderTest.testProteinSequenceFactoring(GenbankProxySequenceReaderTest.java:84)
[junit]
[junit] Testcase: testFeatures[0] took 0 sec
[junit] Testcase: testProteinSequenceFactoring[1] took 0.001 sec
[junit] Caused an ERROR
[junit] eutils.ncbi.nlm.nih.gov
[junit] java.net.UnknownHostException: eutils.ncbi.nlm.nih.gov
-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
