Your message dated Sat, 15 Nov 2014 10:19:21 +0100
with message-id <54671a99.1010...@wollumbin.marsaxlokk.dhcp.io>
and subject line Re: debichem-abinitio: package fails to upgrade properly from
wheezy
has caused the Debian Bug report #769550,
regarding debichem-abinitio: package fails to upgrade properly from wheezy
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
769550: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=769550
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: debichem-abinitio
Version: 0.0.3
Severity: serious
User: debian...@lists.debian.org
Usertags: instest-20141114 instest
Hi,
While testing the installation of all packages in jessie, I ran
into the following problem:
> -- Now testing upgrade from wheezy-instest.
> -- Finding version in wheezy-instest: debichem-abinitio 0.0.3
> -- Installing debichem-abinitio in wheezy-instest: OK
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Starting
> Starting 2
> Done
> The following extra packages will be installed:
> abinit aces3 adduser blcr-util cp2k cp2k-data debichem-tasks dmidecode
> laptop-detect libblacs-mpi1 libblas3 libblas3gf libcr0 libfftw3-3
> libgfortran3 libgomp1 libibverbs1 libint1 liblapack3 liblapack3gf
> liblocale-gettext-perl libnuma1 libopenmpi1.3 libquadmath0 libsc-data libsc7
> libscalapack-mpi1 libtorque2 mpi-default-bin mpqc nwchem nwchem-data
> openmpi-bin openmpi-checkpoint openmpi-common openmx psi3 quantum-espresso
> quantum-espresso-data tasksel tasksel-data
> Suggested packages:
> abinit-doc perl-modules blcr-dkms libfftw3-bin libfftw3-dev scalapack-doc
> mpqc-support gfortran
> The following NEW packages will be installed:
> abinit aces3 adduser blcr-util cp2k cp2k-data debichem-abinitio
> debichem-tasks dmidecode laptop-detect libblacs-mpi1 libblas3 libblas3gf
> libcr0 libfftw3-3 libgfortran3 libgomp1 libibverbs1 libint1 liblapack3
> liblapack3gf liblocale-gettext-perl libnuma1 libopenmpi1.3 libquadmath0
> libsc-data libsc7 libscalapack-mpi1 libtorque2 mpi-default-bin mpqc nwchem
> nwchem-data openmpi-bin openmpi-checkpoint openmpi-common openmx psi3
> quantum-espresso quantum-espresso-data tasksel tasksel-data
> 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded.
> Need to get 136 MB of archives.
> After this operation, 598 MB of additional disk space will be used.
> Get:1 http://localhost/debian/ wheezy/main liblocale-gettext-perl amd64
> 1.05-7+b1 [20.4 kB]
> Get:2 http://localhost/debian/ wheezy/main tasksel-data all 3.14.1 [20.6 kB]
> Get:3 http://localhost/debian/ wheezy/main tasksel all 3.14.1 [94.8 kB]
> Get:4 http://localhost/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB]
> Get:5 http://localhost/debian/ wheezy/main libfftw3-3 amd64 3.3.2-3.1 [1665
> kB]
> Get:6 http://localhost/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB]
> Get:7 http://localhost/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB]
> Get:8 http://localhost/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB]
> Get:9 http://localhost/debian/ wheezy/main dmidecode amd64 2.11-9 [77.1 kB]
> Get:10 http://localhost/debian/ wheezy/main libblas3 amd64 1.2.20110419-5
> [293 kB]
> Get:11 http://localhost/debian/ wheezy/main liblapack3 amd64
> 3.4.1+dfsg-1+deb70u1 [5036 kB]
> Get:12 http://localhost/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3
> kB]
> Get:13 http://localhost/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7
> kB]
> Get:14 http://localhost/debian/ wheezy/main libtorque2 amd64
> 2.4.16+dfsg-1+deb7u3 [121 kB]
> Get:15 http://localhost/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436
> kB]
> Get:16 http://localhost/debian/ wheezy/main aces3 amd64 3.0.6-7 [12.6 MB]
> Get:17 http://localhost/debian/ wheezy/main libcr0 amd64 0.8.5-2 [36.9 kB]
> Get:18 http://localhost/debian/ wheezy/main blcr-util amd64 0.8.5-2 [43.7 kB]
> Get:19 http://localhost/debian/ wheezy/main openmpi-common all 1.4.5-1 [101
> kB]
> Get:20 http://localhost/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB]
> Get:21 http://localhost/debian/ wheezy/main mpi-default-bin amd64 1.0.1 [2990
> B]
> Get:22 http://localhost/debian/ wheezy/main libblacs-mpi1 amd64 1.1-31 [68.4
> kB]
> Get:23 http://localhost/debian/ wheezy/main libint1 amd64 1.1.4-1 [971 kB]
> Get:24 http://localhost/debian/ wheezy/main libblas3gf all 1.2.20110419-5
> [8090 B]
> Get:25 http://localhost/debian/ wheezy/main liblapack3gf all
> 3.4.1+dfsg-1+deb70u1 [10.5 kB]
> Get:26 http://localhost/debian/ wheezy/main libscalapack-mpi1 amd64 1.8.0-9
> [3201 kB]
> Get:27 http://localhost/debian/ wheezy/main cp2k-data all 2.2.426-8 [9358 kB]
> Get:28 http://localhost/debian/ wheezy/main cp2k amd64 2.2.426-8 [12.5 MB]
> Get:29 http://localhost/debian/ wheezy/main laptop-detect amd64 0.13.7 [5224
> B]
> Get:30 http://localhost/debian/ wheezy/main libsc-data all 2.3.1-14 [313 kB]
> Get:31 http://localhost/debian/ wheezy/main libsc7 amd64 2.3.1-14 [3243 kB]
> Get:32 http://localhost/debian/ wheezy/main mpqc amd64 2.3.1-14 [124 kB]
> Get:33 http://localhost/debian/ wheezy/main nwchem-data all 6.1-6 [9326 kB]
> Get:34 http://localhost/debian/ wheezy/main nwchem amd64 6.1-6 [14.1 MB]
> Get:35 http://localhost/debian/ wheezy/main psi3 amd64 3.4.0-4 [6806 kB]
> Get:36 http://localhost/debian/ wheezy/main quantum-espresso amd64 5.0-1
> [41.1 MB]
> Get:37 http://localhost/debian/ wheezy/main quantum-espresso-data all 5.0-1
> [6392 kB]
> Get:38 http://localhost/debian/ wheezy/main abinit amd64 5.3.4.dfsg-3 [5009
> kB]
> Get:39 http://localhost/debian/ wheezy/main debichem-tasks all 0.0.3 [3296 B]
> Get:40 http://localhost/debian/ wheezy/main debichem-abinitio all 0.0.3 [4758
> B]
> Get:41 http://localhost/debian/ wheezy/main openmpi-checkpoint amd64 1.4.5-1
> [96.8 kB]
> Get:42 http://localhost/debian/ wheezy/main openmx amd64 3.5-1 [1031 kB]
> Extracting templates from packages: 71%
Extracting templates from packages: 100%
> Preconfiguring packages ...
> Fetched 136 MB in 6s (22.2 MB/s)
> Selecting previously unselected package liblocale-gettext-perl.
> (Reading database ... 6634 files and directories currently installed.)
> Unpacking liblocale-gettext-perl (from
> .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ...
> Selecting previously unselected package tasksel-data.
> Unpacking tasksel-data (from .../tasksel-data_3.14.1_all.deb) ...
> Selecting previously unselected package tasksel.
> Unpacking tasksel (from .../tasksel_3.14.1_all.deb) ...
> Selecting previously unselected package libgomp1:amd64.
> Unpacking libgomp1:amd64 (from .../libgomp1_4.7.2-5_amd64.deb) ...
> Selecting previously unselected package libfftw3-3:amd64.
> Unpacking libfftw3-3:amd64 (from .../libfftw3-3_3.3.2-3.1_amd64.deb) ...
> Selecting previously unselected package libquadmath0:amd64.
> Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ...
> Selecting previously unselected package libgfortran3:amd64.
> Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ...
> Selecting previously unselected package adduser.
> Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ...
> Selecting previously unselected package dmidecode.
> Unpacking dmidecode (from .../dmidecode_2.11-9_amd64.deb) ...
> Selecting previously unselected package libblas3.
> Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ...
> Selecting previously unselected package liblapack3.
> Unpacking liblapack3 (from .../liblapack3_3.4.1+dfsg-1+deb70u1_amd64.deb) ...
> Selecting previously unselected package libibverbs1.
> Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ...
> Selecting previously unselected package libnuma1.
> Unpacking libnuma1 (from .../libnuma1_2.0.8~rc4-1_amd64.deb) ...
> Selecting previously unselected package libtorque2.
> Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u3_amd64.deb) ...
> Selecting previously unselected package libopenmpi1.3.
> Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ...
> Selecting previously unselected package aces3.
> Unpacking aces3 (from .../aces3_3.0.6-7_amd64.deb) ...
> Selecting previously unselected package libcr0.
> Unpacking libcr0 (from .../libcr0_0.8.5-2_amd64.deb) ...
> Selecting previously unselected package blcr-util.
> Unpacking blcr-util (from .../blcr-util_0.8.5-2_amd64.deb) ...
> Selecting previously unselected package openmpi-common.
> Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ...
> Selecting previously unselected package openmpi-bin.
> Unpacking openmpi-bin (from .../openmpi-bin_1.4.5-1_amd64.deb) ...
> Selecting previously unselected package mpi-default-bin.
> Unpacking mpi-default-bin (from .../mpi-default-bin_1.0.1_amd64.deb) ...
> Selecting previously unselected package libblacs-mpi1.
> Unpacking libblacs-mpi1 (from .../libblacs-mpi1_1.1-31_amd64.deb) ...
> Selecting previously unselected package libint1.
> Unpacking libint1 (from .../libint1_1.1.4-1_amd64.deb) ...
> Selecting previously unselected package libblas3gf.
> Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-5_all.deb) ...
> Selecting previously unselected package liblapack3gf.
> Unpacking liblapack3gf (from .../liblapack3gf_3.4.1+dfsg-1+deb70u1_all.deb)
> ...
> Selecting previously unselected package libscalapack-mpi1.
> Unpacking libscalapack-mpi1 (from .../libscalapack-mpi1_1.8.0-9_amd64.deb) ...
> Selecting previously unselected package cp2k-data.
> Unpacking cp2k-data (from .../cp2k-data_2.2.426-8_all.deb) ...
> Selecting previously unselected package cp2k.
> Unpacking cp2k (from .../cp2k_2.2.426-8_amd64.deb) ...
> Selecting previously unselected package laptop-detect.
> Unpacking laptop-detect (from .../laptop-detect_0.13.7_amd64.deb) ...
> Selecting previously unselected package libsc-data.
> Unpacking libsc-data (from .../libsc-data_2.3.1-14_all.deb) ...
> Selecting previously unselected package libsc7.
> Unpacking libsc7 (from .../libsc7_2.3.1-14_amd64.deb) ...
> Selecting previously unselected package mpqc.
> Unpacking mpqc (from .../mpqc_2.3.1-14_amd64.deb) ...
> Selecting previously unselected package nwchem-data.
> Unpacking nwchem-data (from .../nwchem-data_6.1-6_all.deb) ...
> Selecting previously unselected package nwchem.
> Unpacking nwchem (from .../nwchem_6.1-6_amd64.deb) ...
> Selecting previously unselected package psi3.
> Unpacking psi3 (from .../psi3_3.4.0-4_amd64.deb) ...
> Selecting previously unselected package quantum-espresso.
> Unpacking quantum-espresso (from .../quantum-espresso_5.0-1_amd64.deb) ...
> Selecting previously unselected package quantum-espresso-data.
> Unpacking quantum-espresso-data (from
> .../quantum-espresso-data_5.0-1_all.deb) ...
> Selecting previously unselected package abinit.
> Unpacking abinit (from .../abinit_5.3.4.dfsg-3_amd64.deb) ...
> Selecting previously unselected package debichem-tasks.
> Unpacking debichem-tasks (from .../debichem-tasks_0.0.3_all.deb) ...
> Selecting previously unselected package debichem-abinitio.
> Unpacking debichem-abinitio (from .../debichem-abinitio_0.0.3_all.deb) ...
> Selecting previously unselected package openmpi-checkpoint.
> Unpacking openmpi-checkpoint (from .../openmpi-checkpoint_1.4.5-1_amd64.deb)
> ...
> Selecting previously unselected package openmx.
> Unpacking openmx (from .../openmx_3.5-1_amd64.deb) ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/adduser.postinst
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> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debianutils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debichem-abinitio.postinst
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> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3gf.postinst
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> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libdb5.1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgc1c2.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgcc1:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libgfortran3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgomp1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libibverbs1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libint1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3gf.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblzma5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libmount1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncurses5:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libncursesw5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libnuma1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libopenmpi1.3.postinst
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> /var/lib/dpkg/info/libpam-modules:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam0g:amd64.postinst
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> /var/lib/dpkg/info/libquadmath0:amd64.postinst
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> /var/lib/dpkg/info/libreadline6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsc7.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libscalapack-mpi1.postinst
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> /var/lib/dpkg/info/debian-archive-keyring.postrm
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> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgomp1:amd64.postrm
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> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libint1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblzma5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libmount1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncurses5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncursesw5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libnuma1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libopenmpi1.3.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpam-modules:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam0g:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libquadmath0:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libreadline6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsc7.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libscalapack-mpi1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libselinux1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsemanage1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsepol1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libslang2:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libss2:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtinfo5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtorque2.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libusb-0.1-4:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libustr-1.0-1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libuuid1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/nvi.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/readline-common.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sensible-utils.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sysv-rc.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tzdata.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/util-linux.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/zlib1g:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/apt.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debichem-abinitio.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dpkg.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fsprogs.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/findutils.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/gnupg.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/initscripts.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.preinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpam-modules:amd64.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/login.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mount.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/passwd.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sysv-rc.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/util-linux.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bsdutils.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debichem-abinitio.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dpkg.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/less.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3gf.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3gf.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mawk.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mount.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/nvi.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/openmpi-bin.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sysv-rc.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/util-linux.prerm
> Setting up liblocale-gettext-perl (1.05-7+b1) ...
> Setting up libgomp1:amd64 (4.7.2-5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libfftw3-3:amd64 (3.3.2-3.1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libquadmath0:amd64 (4.7.2-5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libgfortran3:amd64 (4.7.2-5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up adduser (3.113+nmu3) ...
> + set -e
> + [ ! -e /etc/adduser.conf ]
> + cp /usr/share/adduser/adduser.conf /etc/adduser.conf
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/adduser.postinst
> configure
> + set -e
> + [ ! -e /etc/adduser.conf ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + db_get adduser/homedir-changed
> + _db_cmd GET adduser/homedir-changed
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET adduser/homedir-changed
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=10 adduser/homedir-changed doesn't exist
> + return 10
> + RET=false
> + [ false != true ]
> + db_get adduser/homedir-permission
> + _db_cmd GET adduser/homedir-permission
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET adduser/homedir-permission
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=true
> + return 0
> + [ true = false ]
> + NEW_PERMISSION=0755
> + grep -q ^DIR_MODE= /etc/adduser.conf
> + cat /etc/adduser.conf
> + sed -ne s/^DIR_MODE=\([0-9]*\).*$/\1/p
> + OLD_PERMISSION=0755
> + [ 0755 != 0755 ]
> Setting up dmidecode (2.11-9) ...
> Setting up libblas3 (1.2.20110419-5) ...
> + set -e
> + update-alternatives --install /usr/lib/libblas.so.3 libblas.so.3
> /usr/lib/libblas/libblas.so.3 10 --slave /usr/lib/libblas.so.3gf
> libblas.so.3gf /usr/lib/libblas/libblas.so.3
> update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide
> /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
> + exit 0
> Setting up liblapack3 (3.4.1+dfsg-1+deb70u1) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/liblapack3.postinst
> configure
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3
> /usr/lib/lapack/liblapack.so.3 10 --slave /usr/lib/liblapack.so.3gf
> liblapack.so.3gf /usr/lib/lapack/liblapack.so.3
> update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
> /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
> + exit 0
> Setting up libibverbs1 (1.1.6-1) ...
> + set -e
> + [ configure = configure ]
> + getent group rdma
> + addgroup --system --quiet rdma
> + [ configure = configure ]
> + ldconfig
> Setting up libnuma1 (2.0.8~rc4-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libtorque2 (2.4.16+dfsg-1+deb7u3) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libopenmpi1.3 (1.4.5-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up aces3 (3.0.6-7) ...
> Setting up libcr0 (0.8.5-2) ...
> + [ configure = configure ]
> + ldconfig
> + [ configure = configure ]
> + ldconfig
> Setting up blcr-util (0.8.5-2) ...
> Setting up openmpi-common (1.4.5-1) ...
> Setting up openmpi-bin (1.4.5-1) ...
> + set -e
> + [ != ]
> + update-alternatives --install /usr/bin/mpirun mpirun
> /usr/bin/mpirun.openmpi 50 --slave /usr/share/man/man1/mpirun.1.gz
> mpirun.1.gz /usr/share/man/man1/mpirun.openmpi.1.gz --slave /usr/bin/mpiexec
> mpiexec /usr/bin/mpiexec.openmpi --slave /usr/share/man/man1/mpiexec.1.gz
> mpiexec.1.gz /usr/share/man/man1/mpiexec.openmpi.1.gz
> update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun
> (mpirun) in auto mode
> + exit 0
> Setting up mpi-default-bin (1.0.1) ...
> Setting up libblacs-mpi1 (1.1-31) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libint1 (1.1.4-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libblas3gf (1.2.20110419-5) ...
> + set -e
> + update-alternatives --remove libblas.so.3gf /usr/lib/libblas/libblas.so.3
> + exit 0
> Setting up liblapack3gf (3.4.1+dfsg-1+deb70u1) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/liblapack3gf.postinst
> configure
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + update-alternatives --remove liblapack.so.3gf
> /usr/lib/liblapack/liblapack.so.3
> + exit 0
> Setting up libscalapack-mpi1 (1.8.0-9) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up cp2k-data (2.2.426-8) ...
> Setting up cp2k (2.2.426-8) ...
> Setting up laptop-detect (0.13.7) ...
> Setting up libsc-data (2.3.1-14) ...
> Setting up libsc7 (2.3.1-14) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up mpqc (2.3.1-14) ...
> Setting up nwchem-data (6.1-6) ...
> Setting up nwchem (6.1-6) ...
> Setting up psi3 (3.4.0-4) ...
> Setting up quantum-espresso (5.0-1) ...
> Setting up quantum-espresso-data (5.0-1) ...
> Setting up abinit (5.3.4.dfsg-3) ...
> Setting up openmpi-checkpoint (1.4.5-1) ...
> Setting up openmx (3.5-1) ...
> Setting up tasksel-data (3.14.1) ...
> + set -e
> + dpkg --compare-versions lt 3.14
> + [ ! -L /usr/share/doc/tasksel-data ]
> Setting up tasksel (3.14.1) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/tasksel.postinst
> configure
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ configure = configure ]
> + which update-menus
> + [ -x ]
> Setting up debichem-tasks (0.0.3) ...
> Setting up debichem-abinitio (0.0.3) ...
> + set -e
> + [ -d /etc/blends -a -f /etc/blends/blends.conf ]
> + exit 0
> -- Upgrading distribution: FAILED
> ## Updating /etc/apt/sources.list...
> ## Running apt-get update...
> Get:1 http://localhost jessie Release.gpg [836 B]
> Get:2 http://localhost jessie Release [190 kB]
> Get:3 http://localhost jessie/main Translation-en [4632 kB]
> Get:4 http://localhost jessie/main amd64 Packages [9107 kB]
> Fetched 13.9 MB in 1s (7459 kB/s)
> Reading package lists...
> ## Running apt-get -y upgrade...
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Entering ResolveByKeep
> Dependencies are not satisfied for util-linux [ amd64 ] < 2.20.1-5.3 ->
> 2.25.2-2 > ( utils )
> Keeping package util-linux:amd64
> Dependencies are not satisfied for sysvinit-utils [ amd64 ] <
> 2.88dsf-41+deb7u1 -> 2.88dsf-57 > ( admin )
> Keeping package sysvinit-utils:amd64
> Dependencies are not satisfied for mount [ amd64 ] < 2.20.1-5.3 -> 2.25.2-2 >
> ( admin )
> Keeping package mount:amd64
> Dependencies are not satisfied for libc-bin [ amd64 ] < 2.13-38+deb7u6 ->
> 2.19-13 > ( libs )
> Keeping package libc-bin:amd64
> Dependencies are not satisfied for login [ amd64 ] < 1:4.1.5.1-1 ->
> 1:4.2-2+b2 > ( admin )
> Keeping package login:amd64
> Dependencies are not satisfied for bsdutils [ amd64 ] < 1:2.20.1-5.3 ->
> 1:2.25.2-2 > ( utils )
> Keeping package bsdutils:amd64
> Dependencies are not satisfied for base-passwd [ amd64 ] < 3.5.26 -> 3.5.37 >
> ( admin )
> Keeping package base-passwd:amd64
> Dependencies are not satisfied for grep [ amd64 ] < 2.12-2 -> 2.20-4 > (
> utils )
> Keeping package grep:amd64
> Dependencies are not satisfied for sysvinit [ amd64 ] < 2.88dsf-41+deb7u1 ->
> 2.88dsf-57 > ( admin )
> Keeping package sysvinit:amd64
> Dependencies are not satisfied for libselinux1 [ amd64 ] < 2.1.9-5 -> 2.3-2 >
> ( libs )
> Keeping package libselinux1:amd64
> Dependencies are not satisfied for dpkg [ amd64 ] < 1.16.15 -> 1.17.21 > (
> admin )
> Keeping package dpkg:amd64
> Dependencies are not satisfied for coreutils [ amd64 ] < 8.13-3.5 -> 8.23-3 >
> ( utils )
> Keeping package coreutils:amd64
> Dependencies are not satisfied for libgcc1 [ amd64 ] < 1:4.7.2-5 ->
> 1:4.9.1-19 > ( libs )
> Keeping package libgcc1:amd64
> Dependencies are not satisfied for libpam0g [ amd64 ] < 1.1.3-7.1 ->
> 1.1.8-3.1 > ( libs )
> Keeping package libpam0g:amd64
> Dependencies are not satisfied for libstdc++6 [ amd64 ] < 4.7.2-5 -> 4.9.1-19
> > ( libs )
> Keeping package libstdc++6:amd64
> Dependencies are not satisfied for apt [ amd64 ] < 0.9.7.9+deb7u6 -> 1.0.9.3
> > ( admin )
> Keeping package apt:amd64
> Dependencies are not satisfied for libapt-pkg4.12 [ amd64 ] < 0.9.7.9+deb7u6
> -> 1.0.9.3 > ( libs )
> Keeping package libapt-pkg4.12:amd64
> Dependencies are not satisfied for libpam-modules [ amd64 ] < 1.1.3-7.1 ->
> 1.1.8-3.1 > ( admin )
> Keeping package libpam-modules:amd64
> Dependencies are not satisfied for libpam-modules [ amd64 ] < 1.1.3-7.1 ->
> 1.1.8-3.1 > ( admin )
> Package libpam-modules:amd64 libpam-modules:amd64 PreDepends on
> libpam-modules-bin [ amd64 ] < 1.1.3-7.1 -> 1.1.8-3.1 > ( admin ) (=
> 1.1.3-7.1)
> Keeping Package libpam-modules-bin:amd64 due to PreDepends
> Dependencies are not satisfied for initscripts [ amd64 ] < 2.88dsf-41+deb7u1
> -> 2.88dsf-57 > ( admin )
> Keeping package initscripts:amd64
> Dependencies are not satisfied for libquadmath0 [ amd64 ] < 4.7.2-5 ->
> 4.9.1-19 > ( libs )
> Keeping package libquadmath0:amd64
> Dependencies are not satisfied for libgfortran3 [ amd64 ] < 4.7.2-5 ->
> 4.9.1-19 > ( libs )
> Keeping package libgfortran3:amd64
> Dependencies are not satisfied for libblas3 [ amd64 ] < 1.2.20110419-5 ->
> 1.2.20110419-10 > ( libs )
> Keeping package libblas3:amd64
> Dependencies are not satisfied for apt-utils [ amd64 ] < 0.9.7.9+deb7u6 ->
> 1.0.9.3 > ( admin )
> Keeping package apt-utils:amd64
> Dependencies are not satisfied for passwd [ amd64 ] < 1:4.1.5.1-1 ->
> 1:4.2-2+b2 > ( admin )
> Keeping package passwd:amd64
> Dependencies are not satisfied for sysv-rc [ amd64 ] < 2.88dsf-41+deb7u1 ->
> 2.88dsf-57 > ( admin )
> Keeping package sysv-rc:amd64
> Dependencies are not satisfied for libsemanage1 [ amd64 ] < 2.1.6-6 -> 2.3-1
> > ( libs )
> Keeping package libsemanage1:amd64
> Dependencies are not satisfied for libsemanage1 [ amd64 ] < 2.1.6-6 -> 2.3-1
> > ( libs )
> Package libsemanage1:amd64 libsemanage1:amd64 Depends on libsemanage-common [
> amd64 ] < 2.1.6-6 -> 2.3-1 > ( libs ) (= 2.1.6-6)
> Keeping Package libsemanage-common:amd64 due to Depends
> Dependencies are not satisfied for openmpi-bin [ amd64 ] < 1.4.5-1 -> 1.6.5-9
> > ( net )
> Keeping package openmpi-bin:amd64
> Dependencies are not satisfied for openmpi-bin [ amd64 ] < 1.4.5-1 -> 1.6.5-9
> > ( net )
> Package openmpi-bin:amd64 openmpi-bin:amd64 Depends on openmpi-common [ amd64
> ] < 1.4.5-1 -> 1.6.5-9 > ( net ) (= 1.4.5-1)
> Keeping Package openmpi-common:amd64 due to Depends
> Dependencies are not satisfied for libsc7 [ amd64 ] < 2.3.1-14 -> 2.3.1-16 >
> ( libs )
> Keeping package libsc7:amd64
> Dependencies are not satisfied for libsc7 [ amd64 ] < 2.3.1-14 -> 2.3.1-16 >
> ( libs )
> Package libsc7:amd64 libsc7:amd64 Depends on libsc-data [ amd64 ] < 2.3.1-14
> -> 2.3.1-16 > ( libs ) (= 2.3.1-14)
> Keeping Package libsc-data:amd64 due to Depends
> Dependencies are not satisfied for mpqc [ amd64 ] < 2.3.1-14 -> 2.3.1-16 > (
> science )
> Keeping package mpqc:amd64
> Dependencies are not satisfied for libgomp1 [ amd64 ] < 4.7.2-5 -> 4.9.1-19 >
> ( libs )
> Keeping package libgomp1:amd64
> Dependencies are not satisfied for quantum-espresso [ amd64 ] < 5.0-1 ->
> 5.1+dfsg-3 > ( science )
> Keeping package quantum-espresso:amd64
> Dependencies are not satisfied for aces3 [ amd64 ] < 3.0.6-7 -> 3.0.8-1 > (
> science )
> Keeping package aces3:amd64
> Dependencies are not satisfied for cp2k [ amd64 ] < 2.2.426-8 -> 2.5.1-3 > (
> science )
> Keeping package cp2k:amd64
> Dependencies are not satisfied for cp2k [ amd64 ] < 2.2.426-8 -> 2.5.1-3 > (
> science )
> Package cp2k:amd64 cp2k:amd64 Depends on cp2k-data [ amd64 ] < 2.2.426-8 ->
> 2.5.1-3 > ( science ) (= 2.2.426-8)
> Keeping Package cp2k-data:amd64 due to Depends
> Dependencies are not satisfied for nwchem [ amd64 ] < 6.1-6 -> 6.5+r26243-2 >
> ( science )
> Keeping package nwchem:amd64
> Dependencies are not satisfied for nwchem [ amd64 ] < 6.1-6 -> 6.5+r26243-2 >
> ( science )
> Package nwchem:amd64 nwchem:amd64 Depends on nwchem-data [ amd64 ] < 6.1-6 ->
> 6.5+r26243-2 > ( science ) (= 6.1-6)
> Keeping Package nwchem-data:amd64 due to Depends
> Dependencies are not satisfied for libfftw3-3 [ amd64 ] < 3.3.2-3.1 ->
> 3.3.4-1.1 > ( libs )
> Keeping package libfftw3-3:amd64
> Dependencies are not satisfied for openmx [ amd64 ] < 3.5-1 -> 3.7.6-1 > (
> science )
> Keeping package openmx:amd64
> Dependencies are not satisfied for nvi [ amd64 ] < 1.81.6-8.2 -> 1.81.6-11+b1
> > ( editors )
> Keeping package nvi:amd64
> Dependencies are not satisfied for abinit [ amd64 ] < 5.3.4.dfsg-3 -> 7.8.2-2
> > ( science )
> Keeping package abinit:amd64
> Dependencies are not satisfied for openmpi-checkpoint [ amd64 ] < 1.4.5-1 ->
> 1.6.5-9 > ( net )
> Keeping package openmpi-checkpoint:amd64
> The following packages have been kept back:
> abinit aces3 apt apt-utils base-passwd bsdutils coreutils cp2k cp2k-data
> dpkg grep initscripts libapt-pkg4.12 libblas3 libc-bin libfftw3-3 libgcc1
> libgfortran3 libgomp1 libpam-modules libpam-modules-bin libpam0g
> libquadmath0 libsc-data libsc7 libselinux1 libsemanage-common libsemanage1
> libstdc++6 login mount mpqc nvi nwchem nwchem-data openmpi-bin
> openmpi-checkpoint openmpi-common openmx passwd quantum-espresso sysv-rc
> sysvinit sysvinit-utils util-linux
> The following packages will be upgraded:
> base-files bash blcr-util dash debconf debfoster debian-archive-keyring
> debianutils diffutils dmidecode e2fslibs e2fsprogs findutils gnupg gpgv gzip
> hostname less libacl1 libapt-inst1.5 libattr1 libblas3gf libblkid1
> libbz2-1.0 libc6 libcomerr2 libcr0 libgc1c2 libibverbs1 libint1 liblapack3
> liblapack3gf liblocale-gettext-perl liblzma5 libmount1 libncurses5
> libncursesw5 libnuma1 libpam-runtime libreadline6 libsepol1 libslang2 libss2
> libtinfo5 libtorque2 libusb-0.1-4 libuuid1 lsb-base mpi-default-bin
> multiarch-support ncurses-base ncurses-bin perl-base psi3
> quantum-espresso-data readline-common sed sensible-utils tar tasksel
> tasksel-data tzdata zlib1g
> 63 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
> Need to get 33.7 MB of archives.
> After this operation, 23.6 MB of additional disk space will be used.
> Get:1 http://localhost/debian/ jessie/main base-files amd64 7.10 [77.7 kB]
> Get:2 http://localhost/debian/ jessie/main libc6 amd64 2.19-13 [4660 kB]
> Get:3 http://localhost/debian/ jessie/main sensible-utils all 0.0.9 [11.3 kB]
> Get:4 http://localhost/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB]
> Get:5 http://localhost/debian/ jessie/main bash amd64 4.3-11 [1174 kB]
> Get:6 http://localhost/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB]
> Get:7 http://localhost/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB]
> Get:8 http://localhost/debian/ jessie/main e2fslibs amd64 1.42.12-1 [185 kB]
> Get:9 http://localhost/debian/ jessie/main e2fsprogs amd64 1.42.12-1 [751 kB]
> Get:10 http://localhost/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485
> kB]
> Get:11 http://localhost/debian/ jessie/main gzip amd64 1.6-4 [111 kB]
> Get:12 http://localhost/debian/ jessie/main hostname amd64 3.15 [13.9 kB]
> Get:13 http://localhost/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1
> [123 kB]
> Get:14 http://localhost/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1
> [282 kB]
> Get:15 http://localhost/debian/ jessie/main libncurses5 amd64 5.9+20140913-1
> [96.7 kB]
> Get:16 http://localhost/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1
> [346 kB]
> Get:17 http://localhost/debian/ jessie/main perl-base amd64 5.20.1-2 [1202 kB]
> Get:18 http://localhost/debian/ jessie/main liblocale-gettext-perl amd64
> 1.05-8+b1 [19.0 kB]
> Get:19 http://localhost/debian/ jessie/main sed amd64 4.2.2-4+b1 [243 kB]
> Get:20 http://localhost/debian/ jessie/main tar amd64 1.27.1-2+b1 [676 kB]
> Get:21 http://localhost/debian/ jessie/main ncurses-base all 5.9+20140913-1
> [222 kB]
> Get:22 http://localhost/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b1 [43.4
> kB]
> Get:23 http://localhost/debian/ jessie/main readline-common all 6.3-8 [57.7
> kB]
> Get:24 http://localhost/debian/ jessie/main libreadline6 amd64 6.3-8+b1 [143
> kB]
> Get:25 http://localhost/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB]
> Get:26 http://localhost/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25
> [21.9 kB]
> Get:27 http://localhost/debian/ jessie/main debconf all 1.5.53 [168 kB]
> Get:28 http://localhost/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3
> kB]
> Get:29 http://localhost/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB]
> Get:30 http://localhost/debian/ jessie/main libuuid1 amd64 2.25.2-2 [63.7 kB]
> Get:31 http://localhost/debian/ jessie/main libblkid1 amd64 2.25.2-2 [155 kB]
> Get:32 http://localhost/debian/ jessie/main libcomerr2 amd64 1.42.12-1 [60.4
> kB]
> Get:33 http://localhost/debian/ jessie/main liblzma5 amd64
> 5.1.1alpha+20120614-2+b1 [194 kB]
> Get:34 http://localhost/debian/ jessie/main libmount1 amd64 2.25.2-2 [163 kB]
> Get:35 http://localhost/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB]
> Get:36 http://localhost/debian/ jessie/main libss2 amd64 1.42.12-1 [64.7 kB]
> Get:37 http://localhost/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2 [88.2
> kB]
> Get:38 http://localhost/debian/ jessie/main libapt-inst1.5 amd64 1.0.9.3 [168
> kB]
> Get:39 http://localhost/debian/ jessie/main tasksel-data all 3.29 [18.1 kB]
> Get:40 http://localhost/debian/ jessie/main tasksel all 3.29 [95.4 kB]
> Get:41 http://localhost/debian/ jessie/main libgc1c2 amd64 1:7.2d-6.4 [132 kB]
> Get:42 http://localhost/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB]
> Get:43 http://localhost/debian/ jessie/main gpgv amd64 1.4.18-4 [206 kB]
> Get:44 http://localhost/debian/ jessie/main debian-archive-keyring all 2014.1
> [30.1 kB]
> Get:45 http://localhost/debian/ jessie/main gnupg amd64 1.4.18-4 [1143 kB]
> Get:46 http://localhost/debian/ jessie/main libpam-runtime all 1.1.8-3.1 [212
> kB]
> Get:47 http://localhost/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1
> [26.7 kB]
> Get:48 http://localhost/debian/ jessie/main multiarch-support amd64 2.19-13
> [178 kB]
> Get:49 http://localhost/debian/ jessie/main tzdata all 2014i-1 [189 kB]
> Get:50 http://localhost/debian/ jessie/main dmidecode amd64 2.12-3 [64.4 kB]
> Get:51 http://localhost/debian/ jessie/main less amd64 458-3 [124 kB]
> Get:52 http://localhost/debian/ jessie/main libcr0 amd64 0.8.5-2.1 [32.4 kB]
> Get:53 http://localhost/debian/ jessie/main blcr-util amd64 0.8.5-2.1 [40.4
> kB]
> Get:54 http://localhost/debian/ jessie/main debfoster amd64 2.7-2 [36.9 kB]
> Get:55 http://localhost/debian/ jessie/main libblas3gf all 1.2.20110419-10
> [8640 B]
> Get:56 http://localhost/debian/ jessie/main libint1 amd64 1.1.5-1 [1110 kB]
> Get:57 http://localhost/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB]
> Get:58 http://localhost/debian/ jessie/main liblapack3gf all 3.5.0-4 [12.5 kB]
> Get:59 http://localhost/debian/ jessie/main libtorque2 amd64 2.4.16+dfsg-1.5
> [105 kB]
> Get:60 http://localhost/debian/ jessie/main psi3 amd64 3.4.0-5 [3696 kB]
> Get:61 http://localhost/debian/ jessie/main quantum-espresso-data all
> 5.1+dfsg-3 [11.1 MB]
> Get:62 http://localhost/debian/ jessie/main libibverbs1 amd64 1.1.8-1 [32.0
> kB]
> Get:63 http://localhost/debian/ jessie/main mpi-default-bin amd64 1.0.2+nmu2
> [3356 B]
> Extracting templates from packages: 47%
Extracting templates from packages: 95%
Extracting templates from packages: 100%
> Preconfiguring packages ...
> Fetched 33.7 MB in 1s (19.6 MB/s)
> (Reading database ... 11626 files and directories currently installed.)
> Preparing to replace base-files 7.1wheezy7 (using
> .../base-files_7.10_amd64.deb) ...
> Unpacking replacement base-files ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/base-files.postinst
> Setting up base-files (7.10) ...
> Installing new version of config file /etc/debian_version ...
> Installing new version of config file /etc/issue ...
> Installing new version of config file /etc/issue.net ...
> + set -e
> + [ ! -e /etc/dpkg/origins/default ]
> + [ configure = configure ]
> + [ 7.1wheezy7 = ]
> + [ ! -d /var/lib/dpkg ]
> + [ ! -f /var/lib/dpkg/status ]
> + [ ! -f /usr/info/dir ]
> + [ ! -f /usr/share/info/dir ]
> + [ configure = configure ]
> + [ 7.1wheezy7 != ]
> + update_to_current_default profile
> + [ -f /etc/profile ]
> + md5sum /etc/profile
> + cut -f 1 -d
> + md5=91901ce5707909cfec8b3a1a6efbfa61
> + grep -q 91901ce5707909cfec8b3a1a6efbfa61
> /usr/share/base-files/profile.md5sums
> + cmp -s /usr/share/base-files/profile /etc/profile
> + cp -p /usr/share/base-files/profile /etc/profile
> + echo Updating /etc/profile to current default.
> Updating /etc/profile to current default.
> + update_to_current_default nsswitch.conf
> + [ -f /etc/nsswitch.conf ]
> + md5sum /etc/nsswitch.conf
> + cut -f 1 -d
> + md5=295c15c4bdac80e50b37689ef08f359c
> + grep -q 295c15c4bdac80e50b37689ef08f359c
> /usr/share/base-files/nsswitch.conf.md5sums
> + cmp -s /usr/share/base-files/nsswitch.conf /etc/nsswitch.conf
> + cp -p /usr/share/base-files/nsswitch.conf /etc/nsswitch.conf
> + echo Updating /etc/nsswitch.conf to current default.
> Updating /etc/nsswitch.conf to current default.
> + dpkg --compare-versions 7.1wheezy7 lt-nl 7.7
> + install_directory mnt 755 root
> + [ ! -d /mnt ]
> + mkdir /mnt
> + chown root:root /mnt
> + chmod 755 /mnt
> + dpkg --compare-versions 7.1wheezy7 lt-nl 6.10
> (Reading database ... 11627 files and directories currently installed.)
> Preparing to replace libc6:amd64 2.13-38+deb7u6 (using
> .../libc6_2.19-13_amd64.deb) ...
> + set -e
> + export LC_ALL=C
> + type=upgrade
> + [ x2.19-13 != xin-favour ]
> + preversion=2.19-13
> + [ upgrade = upgrade ]
> + dpkg --compare-versions 2.19-13 lt 2.13-17
> + [ -n 2.19-13 ]
> + dpkg --compare-versions 2.19-13 lt 2.13-5
> + exit 0
> Checking for services that may need to be restarted...
> Checking init scripts...
> Unpacking replacement libc6:amd64 ...
> + set -e
> + [ upgrade = remove ]
> + [ upgrade = deconfigure ]
> + [ upgrade = purge ]
> + [ upgrade = remove ]
> + exit 0
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.prerm
> Setting up libc6:amd64 (2.19-13) ...
> + set -e
> + export LC_ALL=C
> + type=configure
> + preversion=2.13-38+deb7u6
> + [ configure = configure ]
> + rm -f /etc/ld.so.hwcappkgs
> + dpkg --print-architecture
> + all_upgraded=yes
> + [ -n ]
> + [ yes = yes ]
> + rm -f /etc/ld.so.nohwcap
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/libc6:amd64.postinst
> configure 2.13-38+deb7u6
> + set -e
> + export LC_ALL=C
> + type=configure
> + preversion=2.13-38+deb7u6
> + [ configure = configure ]
> + rm -f /etc/ld.so.hwcappkgs
> + dpkg --print-architecture
> + all_upgraded=yes
> + [ -n ]
> + [ yes = yes ]
> + rm -f /etc/ld.so.nohwcap
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ -n 2.13-38+deb7u6 ]
> + [ ! -d /var/mail ]
> + dpkg --compare-versions 2.13-38+deb7u6 lt 2.19
> + check=apache2.2-common apache apache-ssl apache-perl autofs at
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr lpr-ppd mysql-server nis openbsd-inetd
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix
> postfix-tls rsync samba
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix
> postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix
> postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh spamassassin
> vsftpd wu-ftpd wu-ftpd-academ wwwoffle
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix
> postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh spamassassin
> vsftpd wu-ftpd wu-ftpd-academ wwwoffle webmin dropbear gdm
> + echo -n Checking for services that may need to be restarted...
> Checking for services that may need to be restarted...+ dpkg -s
> apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop
> courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron
> lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix
> postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh spamassassin
> vsftpd wu-ftpd wu-ftpd-academ wwwoffle webmin dropbear gdm
> + egrep ^Package:|^Status:
> + awk {if ($1 ~ /^Package:/) { package=$2 } else if ($0 ~ /^Status: .*
> installed$/) { print package }}
> + check=
> + echo
> + sed -es/\bapache2.2-common\b/apache2/g -es/\bat\b/atd/g
> -es/\bdovecot-common\b/dovecot/g -es/\bexim4-base\b/exim4/g -es/\blpr\b/lpd/g
> -es/\blpr-ppd\b/lpd-ppd/g -es/\bmysql-server\b/mysql/g
> -es/\bsasl2-bin\b/saslauthd/g
> + check=
> + echo
>
> + echo Checking init scripts...
> Checking init scripts...
> + runlevel
> + sed s/.*\ //
> + rl=unknown
> + [ -n ]
> + echo Nothing to restart.
> Nothing to restart.
> + TELINIT=yes
> + ischroot
> + TELINIT=no
> + [ no = yes ]
> + [ configure = configure ]
> + ldconfig
> + exit 0
> (Reading database ... 11630 files and directories currently installed.)
> Preparing to replace sensible-utils 0.0.7 (using
> .../sensible-utils_0.0.9_all.deb) ...
> Unpacking replacement sensible-utils ...
> + set -e
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sensible-utils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sensible-utils.postrm
> Setting up sensible-utils (0.0.9) ...
> + set -e
> + which update-mime
> (Reading database ... 11632 files and directories currently installed.)
> Preparing to replace debianutils 4.3.2 (using
> .../debianutils_4.4+b1_amd64.deb) ...
> Unpacking replacement debianutils ...
> + set -e
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debianutils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debianutils.postrm
> Setting up debianutils (4.4+b1) ...
> + test -z 4.3.2
> + which update-mime
> (Reading database ... 11653 files and directories currently installed.)
> Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using
> .../archives/bash_4.3-11_amd64.deb) ...
> + set -e
> + case "$1" in
> + update-alternatives --remove builtins.7.gz
> /usr/share/man/man7/bash-builtins.7.gz
> Unpacking replacement bash ...
> + set -e
> + which update-menus
> + [ -x ]
> + exit 0
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.prerm
> Setting up bash (4.3-11) ...
> Installing new version of config file /etc/bash.bashrc ...
> Installing new version of config file /etc/skel/.bashrc ...
> + set -e
> + '[' '!' -e /bin/sh ']'
> + update-alternatives --install /usr/share/man/man7/builtins.7.gz
> builtins.7.gz /usr/share/man/man7/bash-builtins.7.gz 10
> update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide
> /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
> + '[' configure = configure ']'
> + dpkg --compare-versions 4.2+dfsg-0.1+deb7u3 le 3.2-3
> + '[' configure = configure ']'
> ++ which update-menus
> + '[' -x '' ']'
> + exit 0
> (Reading database ... 11661 files and directories currently installed.)
> Preparing to replace dash 0.5.7-3 (using .../dash_0.5.7-4+b1_amd64.deb) ...
> + set -e
> + [ upgrade = remove ]
> + [ upgrade = deconfigure ]
> + [ upgrade = remove ]
> Unpacking replacement dash ...
> + set -e
> + test upgrade != upgrade
> + dpkg --compare-versions 0.5.7-4+b1 ge 0.5.2-3
> + test upgrade != remove
> + test upgrade = purge
> + exit 0
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.prerm
> Setting up dash (0.5.7-4+b1) ...
> + set -e
> + debconf=
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/dash.postinst configure
> 0.5.7-3
> + set -e
> + debconf=
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + debconf=yes
> + [ configure = configure ]
> + [ -z 0.5.7-3 ]
> + [ configure = configure ]
> + dpkg --compare-versions 0.5.7-3 lt 0.4.18
> + [ yes ]
> + db_get dash/sh
> + _db_cmd GET dash/sh
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET dash/sh
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=true
> + return 0
> + check_divert true /bin/sh dash
> + dfile=/bin/sh
> + ltarget=dash
> + distrib=/bin/sh.distrib
> + dpkg-divert --listpackage /bin/sh
> + diverter=dash
> + dpkg-divert --truename /bin/sh
> + truename=/bin/sh.distrib
> + [ dash != dash ]
> + check_divert true /usr/share/man/man1/sh.1.gz dash.1.gz
> /usr/share/man/man1/sh.distrib.1.gz
> + dfile=/usr/share/man/man1/sh.1.gz
> + ltarget=dash.1.gz
> + distrib=/usr/share/man/man1/sh.distrib.1.gz
> + dpkg-divert --listpackage /usr/share/man/man1/sh.1.gz
> + diverter=dash
> + dpkg-divert --truename /usr/share/man/man1/sh.1.gz
> + truename=/usr/share/man/man1/sh.distrib.1.gz
> + [ dash != dash ]
> + test configure = configure
> + test -x /usr/bin/update-menus
> + exit 0
> (Reading database ... 11661 files and directories currently installed.)
> Preparing to replace diffutils 1:3.2-6 (using
> .../diffutils_1%3a3.3-1+b1_amd64.deb) ...
> Unpacking replacement diffutils ...
> Setting up diffutils (1:3.3-1+b1) ...
> (Reading database ... 11663 files and directories currently installed.)
> Preparing to replace e2fslibs:amd64 1.42.5-1.1 (using
> .../e2fslibs_1.42.12-1_amd64.deb) ...
> Unpacking replacement e2fslibs:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fslibs:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fslibs:amd64.postrm
> Setting up e2fslibs:amd64 (1.42.12-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11663 files and directories currently installed.)
> Preparing to replace e2fsprogs 1.42.5-1.1 (using
> .../e2fsprogs_1.42.12-1_amd64.deb) ...
> Unpacking replacement e2fsprogs ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fsprogs.preinst
> Setting up e2fsprogs (1.42.12-1) ...
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace findutils 4.4.2-4 (using
> .../findutils_4.4.2-9+b1_amd64.deb) ...
> Unpacking replacement findutils ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/findutils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/findutils.preinst
> Setting up findutils (4.4.2-9+b1) ...
> + set -e
> + [ configure = configure ]
> + dpkg --compare-versions 4.4.2-4 le-nl 4.1.7-2
> + [ -d /var/cache/locate/ ]
> (Reading database ... 11669 files and directories currently installed.)
> Preparing to replace gzip 1.5-1.1 (using .../archives/gzip_1.6-4_amd64.deb)
> ...
> Unpacking replacement gzip ...
> Setting up gzip (1.6-4) ...
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace hostname 3.11 (using .../hostname_3.15_amd64.deb) ...
> Unpacking replacement hostname ...
> Setting up hostname (3.15) ...
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace libncursesw5:amd64 5.9-10 (using
> .../libncursesw5_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement libncursesw5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libtinfo5:amd64 5.9-10 (using
> .../libtinfo5_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement libtinfo5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libncursesw5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtinfo5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncursesw5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtinfo5:amd64.postrm
> Setting up libtinfo5:amd64 (5.9+20140913-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace libncurses5:amd64 5.9-10 (using
> .../libncurses5_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement libncurses5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncurses5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncurses5:amd64.postrm
> Setting up libncurses5:amd64 (5.9+20140913-1) ...
> + set -e
> + PACKAGE=libncurses5
> + dpkg --compare-versions 5.9-10 lt-nl 5.9-7
> + [ configure = configure ]
> + ldconfig
> + exit 0
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace ncurses-bin 5.9-10 (using
> .../ncurses-bin_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement ncurses-bin ...
> Setting up ncurses-bin (5.9+20140913-1) ...
> (Reading database ... 11666 files and directories currently installed.)
> Preparing to replace perl-base 5.14.2-21+deb7u2 (using
> .../perl-base_5.20.1-2_amd64.deb) ...
> Unpacking replacement perl-base ...
> Setting up perl-base (5.20.1-2) ...
> (Reading database ... 11166 files and directories currently installed.)
> Preparing to replace liblocale-gettext-perl 1.05-7+b1 (using
> .../liblocale-gettext-perl_1.05-8+b1_amd64.deb) ...
> Unpacking replacement liblocale-gettext-perl ...
> Preparing to replace sed 4.2.1-10 (using .../sed_4.2.2-4+b1_amd64.deb) ...
> Unpacking replacement sed ...
> Setting up sed (4.2.2-4+b1) ...
> (Reading database ... 11169 files and directories currently installed.)
> Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.27.1-2+b1_amd64.deb)
> ...
> + set -e
> Unpacking replacement tar ...
> + set -e
> + which update-mime
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.prerm
> Setting up tar (1.27.1-2+b1) ...
> + set -e
> + update-alternatives --install /usr/sbin/rmt rmt /usr/sbin/rmt-tar 50
> --slave /usr/share/man/man8/rmt.8.gz rmt.8.gz /usr/share/man/man8/rmt-tar.8.gz
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace ncurses-base 5.9-10 (using
> .../ncurses-base_5.9+20140913-1_all.deb) ...
> Unpacking replacement ncurses-base ...
> Setting up ncurses-base (5.9+20140913-1) ...
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace libbz2-1.0:amd64 1.0.6-4 (using
> .../libbz2-1.0_1.0.6-7+b1_amd64.deb) ...
> Unpacking replacement libbz2-1.0:amd64 ...
> + set -eu
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libbz2-1.0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libbz2-1.0:amd64.postrm
> Setting up libbz2-1.0:amd64 (1.0.6-7+b1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace readline-common 6.2+dfsg-0.1 (using
> .../readline-common_6.3-8_all.deb) ...
> Unpacking replacement readline-common ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/readline-common.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/readline-common.postrm
> Setting up readline-common (6.3-8) ...
> + [ configure = configure ]
> + [ 6.2+dfsg-0.1 = ]
> (Reading database ... 11176 files and directories currently installed.)
> Preparing to replace libreadline6:amd64 6.2+dfsg-0.1 (using
> .../libreadline6_6.3-8+b1_amd64.deb) ...
> Unpacking replacement libreadline6:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libreadline6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libreadline6:amd64.postrm
> Setting up libreadline6:amd64 (6.3-8+b1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11177 files and directories currently installed.)
> Preparing to replace libslang2:amd64 2.2.4-15 (using
> .../libslang2_2.3.0-2_amd64.deb) ...
> Unpacking replacement libslang2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libslang2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libslang2:amd64.postrm
> Setting up libslang2:amd64 (2.3.0-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11177 files and directories currently installed.)
> Preparing to replace libusb-0.1-4:amd64 2:0.1.12-20+nmu1 (using
> .../libusb-0.1-4_2%3a0.1.12-25_amd64.deb) ...
> Unpacking replacement libusb-0.1-4:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libusb-0.1-4:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libusb-0.1-4:amd64.postrm
> Setting up libusb-0.1-4:amd64 (2:0.1.12-25) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11178 files and directories currently installed.)
> Preparing to replace debconf 1.5.49 (using .../debconf_1.5.53_all.deb) ...
> + set -e
> + dpkg -L debconf
> + awk $0~/\.py$/ {print $0"c\n" $0"o"}
> + xargs rm -f
> + which pyclean
> + dpkg -L debconf
> + grep .py$
> + read file
> + rm -f /usr/share/pyshared/debconf.py[co]
> + read file
> + rm -f /usr/lib/python3/dist-packages/debconf.py[co]
> + read file
> + rm -f /usr/lib/python2.7/dist-packages/debconf.py[co]
> + read file
> + rm -f /usr/lib/python2.6/dist-packages/debconf.py[co]
> + read file
> + which py3clean
> + exit 0
> Unpacking replacement debconf ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.prerm
> Setting up debconf (1.5.53) ...
> + set -e
> + [ -z ]
> + [ configure = configure ]
> + [ -n 1.5.49 ]
> + dpkg --compare-versions 1.5.49 lt 1.1.0
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/debconf.postinst
> configure 1.5.49
> + set -e
> + [ -z 1 ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ configure = configure ]
> + [ -n 1.5.49 ]
> + dpkg --compare-versions 1.5.49 lt 1.3.11
> + which pycompile
> + which py3compile
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libattr1:amd64 1:2.4.46-8 (using
> .../libattr1_1%3a2.4.47-2_amd64.deb) ...
> Unpacking replacement libattr1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libattr1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libattr1:amd64.postrm
> Setting up libattr1:amd64 (1:2.4.47-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libacl1:amd64 2.2.51-8 (using
> .../libacl1_2.2.52-2_amd64.deb) ...
> Unpacking replacement libacl1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libacl1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libacl1:amd64.postrm
> Setting up libacl1:amd64 (2.2.52-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libuuid1:amd64 2.20.1-5.3 (using
> .../libuuid1_2.25.2-2_amd64.deb) ...
> Unpacking replacement libuuid1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libuuid1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libuuid1:amd64.postrm
> Setting up libuuid1:amd64 (2.25.2-2) ...
> + set -e
> + getent group libuuid
> + getent group uuidd
> + groupmod --new-name uuidd libuuid
> + getent passwd libuuid
> + getent passwd uuidd
> + invoke-rc.d --quiet uuidd stop
> + true
> + usermod --login uuidd --shell /bin/false --home /run/uuidd libuuid
> + [ -d /var/lib/libuuid ]
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace libblkid1:amd64 2.20.1-5.3 (using
> .../libblkid1_2.25.2-2_amd64.deb) ...
> Unpacking replacement libblkid1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblkid1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblkid1:amd64.postrm
> Setting up libblkid1:amd64 (2.25.2-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace libcomerr2:amd64 1.42.5-1.1 (using
> .../libcomerr2_1.42.12-1_amd64.deb) ...
> Unpacking replacement libcomerr2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcomerr2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcomerr2:amd64.postrm
> Setting up libcomerr2:amd64 (1.42.12-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace liblzma5:amd64 5.1.1alpha+20120614-2 (using
> .../liblzma5_5.1.1alpha+20120614-2+b1_amd64.deb) ...
> Unpacking replacement liblzma5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblzma5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblzma5:amd64.postrm
> Setting up liblzma5:amd64 (5.1.1alpha+20120614-2+b1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libmount1 2.20.1-5.3 (using
> .../libmount1_2.25.2-2_amd64.deb) ...
> Unpacking replacement libmount1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libmount1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libmount1:amd64.postrm
> Setting up libmount1:amd64 (2.25.2-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libsepol1:amd64 2.1.4-3 (using
> .../libsepol1_2.3-2_amd64.deb) ...
> Unpacking replacement libsepol1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsepol1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsepol1:amd64.postrm
> Setting up libsepol1:amd64 (2.3-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libss2:amd64 1.42.5-1.1 (using
> .../libss2_1.42.12-1_amd64.deb) ...
> Unpacking replacement libss2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libss2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libss2:amd64.postrm
> Setting up libss2:amd64 (1.42.12-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace zlib1g:amd64 1:1.2.7.dfsg-13 (using
> .../zlib1g_1%3a1.2.8.dfsg-2_amd64.deb) ...
> Unpacking replacement zlib1g:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/zlib1g:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/zlib1g:amd64.postrm
> Setting up zlib1g:amd64 (1:1.2.8.dfsg-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libapt-inst1.5:amd64 0.9.7.9+deb7u6 (using
> .../libapt-inst1.5_1.0.9.3_amd64.deb) ...
> Unpacking replacement libapt-inst1.5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace tasksel-data 3.14.1 (using
> .../tasksel-data_3.29_all.deb) ...
> Unpacking replacement tasksel-data ...
> Preparing to replace tasksel 3.14.1 (using .../archives/tasksel_3.29_all.deb)
> ...
> Unpacking replacement tasksel ...
> + set -e
> + which update-menus
> + [ -x ]
> + [ upgrade = purge ]
> Preparing to replace libgc1c2 1:7.1-9.1 (using
> .../libgc1c2_1%3a7.2d-6.4_amd64.deb) ...
> Unpacking replacement libgc1c2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libnuma1 2.0.8~rc4-1 (using
> .../libnuma1_2.0.10-1_amd64.deb) ...
> Unpacking replacement libnuma1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace gpgv 1.4.12-7+deb7u6 (using .../gpgv_1.4.18-4_amd64.deb)
> ...
> Unpacking replacement gpgv ...
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libapt-inst1.5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgc1c2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libnuma1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel-data.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libapt-inst1.5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgc1c2:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libnuma1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel.postrm
> Setting up gpgv (1.4.18-4) ...
> (Reading database ... 11178 files and directories currently installed.)
> Preparing to replace debian-archive-keyring 2014.1~deb7u1 (using
> .../debian-archive-keyring_2014.1_all.deb) ...
> Unpacking replacement debian-archive-keyring ...
> + set -e
> + [ upgrade = purge ]
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/debian-archive-keyring.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/debian-archive-keyring.postrm
> Setting up debian-archive-keyring (2014.1) ...
> + set -e
> + [ configure = configure -a -n 2014.1~deb7u1 ]
> + dpkg --compare-versions 2014.1~deb7u1 lt 2012.1
> (Reading database ... 11178 files and directories currently installed.)
> Preparing to replace gnupg 1.4.12-7+deb7u6 (using
> .../gnupg_1.4.18-4_amd64.deb) ...
> Unpacking replacement gnupg ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/gnupg.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/gnupg.preinst
> Setting up gnupg (1.4.18-4) ...
> + set -e
> + [ configure = configure ]
> + [ -e /etc/udev/rules.d/z60_gnupg.rules ]
> (Reading database ... 11177 files and directories currently installed.)
> Preparing to replace libpam-runtime 1.1.3-7.1 (using
> .../libpam-runtime_1.1.8-3.1_all.deb) ...
> + set -e
> + [ upgrade = remove ]
> Unpacking replacement libpam-runtime ...
> + [ upgrade = purge ]
> + [ upgrade = purge ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.prerm
> Setting up libpam-runtime (1.1.8-3.1) ...
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/libpam-runtime.postinst
> configure 1.1.3-7.1
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + force=
> + [ -z 1.1.3-7.1 ]
> + dpkg --compare-versions 1.1.3-7.1 lt 1.0.1-11
> + pam-auth-update --package
> + [ -n ]
> + dpkg --compare-versions 1.1.3-7.1 lt-nl 1.1.0-1
> (Reading database ... 11227 files and directories currently installed.)
> Preparing to replace lsb-base 4.1+Debian8+deb7u1 (using
> .../lsb-base_4.1+Debian13+nmu1_all.deb) ...
> Unpacking replacement lsb-base ...
> Setting up lsb-base (4.1+Debian13+nmu1) ...
> (Reading database ... 11227 files and directories currently installed.)
> Preparing to replace multiarch-support 2.13-38+deb7u6 (using
> .../multiarch-support_2.19-13_amd64.deb) ...
> Unpacking replacement multiarch-support ...
> Setting up multiarch-support (2.19-13) ...
> (Reading database ... 11227 files and directories currently installed.)
> Preparing to replace tzdata 2014h-0wheezy1 (using .../tzdata_2014i-1_all.deb)
> ...
> Unpacking replacement tzdata ...
> + set -e
> + [ upgrade = purge ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tzdata.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tzdata.postrm
> Setting up tzdata (2014i-1) ...
> + set -e
> + LC_ALL=C
> + LANG=C
> + unset TZ
> + umask 022
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/tzdata.postinst
> configure 2014h-0wheezy1
> + set -e
> + LC_ALL=C
> + LANG=C
> + unset TZ
> + umask 022
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + db_version 2.0
> + _db_cmd VERSION 2.0
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n VERSION 2.0
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=2.0
> + return 0
> + [ configure = configure ]
> + [ -e /etc/timezone ]
> + AREA=Etc
> + ZONE=UTC
> + db_get tzdata/Areas
> + _db_cmd GET tzdata/Areas
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET tzdata/Areas
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=Etc
> + return 0
> + AREA=Etc
> + db_get tzdata/Zones/Etc
> + _db_cmd GET tzdata/Zones/Etc
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET tzdata/Zones/Etc
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=UTC
> + return 0
> + ZONE=UTC
> + db_stop
> + echo STOP
> + echo Etc/UTC
> + cp -f /usr/share/zoneinfo/Etc/UTC /etc/localtime.dpkg-new
> + mv -f /etc/localtime.dpkg-new /etc/localtime
> + which restorecon
> + echo
>
> + echo Current default time zone: 'Etc/UTC'
> Current default time zone: 'Etc/UTC'
> + LC_ALL=C TZ=UTC0 date
> + TZBase=Thu Nov 13 10:49:15 UTC 2014
> + LC_ALL=C TZ=UTC0 date -d Thu Nov 13 10:49:15 UTC 2014
> + UTdate=Thu Nov 13 10:49:15 UTC 2014
> + unset TZ
> + LANG=C date -d Thu Nov 13 10:49:15 UTC 2014
> + TZdate=Thu Nov 13 10:49:15 UTC 2014
> + echo Local time is now: Thu Nov 13 10:49:15 UTC 2014.
> Local time is now: Thu Nov 13 10:49:15 UTC 2014.
> + echo Universal Time is now: Thu Nov 13 10:49:15 UTC 2014.
> Universal Time is now: Thu Nov 13 10:49:15 UTC 2014.
> + [ -z ]
> + echo Run 'dpkg-reconfigure tzdata' if you wish to change it.
> Run 'dpkg-reconfigure tzdata' if you wish to change it.
> + echo
>
> + exit 0
> (Reading database ... 11230 files and directories currently installed.)
> Preparing to replace dmidecode 2.11-9 (using .../dmidecode_2.12-3_amd64.deb)
> ...
> Unpacking replacement dmidecode ...
> Preparing to replace less 444-4 (using .../archives/less_458-3_amd64.deb) ...
> + set -e
> + exit 0
> Unpacking replacement less ...
> + set -e
> + which update-mime
> Preparing to replace libcr0 0.8.5-2 (using .../libcr0_0.8.5-2.1_amd64.deb) ...
> Unpacking replacement libcr0 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace blcr-util 0.8.5-2 (using
> .../blcr-util_0.8.5-2.1_amd64.deb) ...
> Unpacking replacement blcr-util ...
> Preparing to replace debfoster 2.7-1.2 (using .../debfoster_2.7-2_amd64.deb)
> ...
> Unpacking replacement debfoster ...
> + [ upgrade = purge ]
> + exit 0
> Preparing to replace libblas3gf 1.2.20110419-5 (using
> .../libblas3gf_1.2.20110419-10_all.deb) ...
> + set -e
> + [ upgrade = upgrade ]
> + update-alternatives --display libblas.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement libblas3gf ...
> Preparing to replace libint1 1.1.4-1 (using .../libint1_1.1.5-1_amd64.deb) ...
> Unpacking replacement libint1 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace liblapack3 3.4.1+dfsg-1+deb70u1 (using
> .../liblapack3_3.5.0-4_amd64.deb) ...
> + set -e
> + [ upgrade = upgrade ]
> + update-alternatives --display liblapack.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement liblapack3 ...
> + set -e
> + [ upgrade = purge ]
> Preparing to replace liblapack3gf 3.4.1+dfsg-1+deb70u1 (using
> .../liblapack3gf_3.5.0-4_all.deb) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/liblapack3gf.prerm
> upgrade 3.5.0-4
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ upgrade = upgrade ]
> + update-alternatives --display liblapack.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement liblapack3gf ...
> Preparing to replace libtorque2 2.4.16+dfsg-1+deb7u3 (using
> .../libtorque2_2.4.16+dfsg-1.5_amd64.deb) ...
> Unpacking replacement libtorque2 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace psi3 3.4.0-4 (using .../psi3_3.4.0-5_amd64.deb) ...
> Unpacking replacement psi3 ...
> Preparing to replace quantum-espresso-data 5.0-1 (using
> .../quantum-espresso-data_5.1+dfsg-3_all.deb) ...
> Unpacking replacement quantum-espresso-data ...
> Replacing files in old package quantum-espresso ...
> Preparing to replace libibverbs1 1.1.6-1 (using
> .../libibverbs1_1.1.8-1_amd64.deb) ...
> Unpacking replacement libibverbs1 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace mpi-default-bin 1.0.1 (using
> .../mpi-default-bin_1.0.2+nmu2_amd64.deb) ...
> Unpacking replacement mpi-default-bin ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/less.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcr0.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libibverbs1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libint1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtorque2.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debfoster.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcr0.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libibverbs1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libint1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtorque2.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/less.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.prerm
> Setting up libncursesw5:amd64 (5.9+20140913-1) ...
> + set -e
> + PACKAGE=libncursesw5
> + dpkg --compare-versions 5.9-10 lt-nl 5.9-7
> + [ configure = configure ]
> + ldconfig
> + exit 0
> Setting up liblocale-gettext-perl (1.05-8+b1) ...
> Setting up libapt-inst1.5:amd64 (1.0.9.3) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libgc1c2:amd64 (1:7.2d-6.4) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libnuma1:amd64 (2.0.10-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up dmidecode (2.12-3) ...
> Setting up less (458-3) ...
> + set -e
> + update-alternatives --quiet --install /usr/bin/pager pager /bin/less 77
> --slave /usr/share/man/man1/pager.1.gz pager.1.gz
> /usr/share/man/man1/less.1.gz
> + update-alternatives --quiet --remove pager /usr/bin/less
> + [ -e /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/less.postinst configure
> 444-4
> + set -e
> + update-alternatives --quiet --install /usr/bin/pager pager /bin/less 77
> --slave /usr/share/man/man1/pager.1.gz pager.1.gz
> /usr/share/man/man1/less.1.gz
> + update-alternatives --quiet --remove pager /usr/bin/less
> + [ -e /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + db_version 2.0
> + _db_cmd VERSION 2.0
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n VERSION 2.0
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=2.0
> + return 0
> + db_purge
> + _db_cmd PURGE
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n PURGE
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=0
> + return 0
> + exit 0
> Setting up libcr0 (0.8.5-2.1) ...
> + [ configure = configure ]
> + ldconfig
> + [ configure = configure ]
> + ldconfig
> Setting up blcr-util (0.8.5-2.1) ...
> Setting up debfoster (2.7-2) ...
> Setting up libblas3gf (1.2.20110419-10) ...
> Setting up libint1 (1.1.5-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up liblapack3 (3.5.0-4) ...
> + set -e
> + update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3
> /usr/lib/lapack/liblapack.so.3 10 --slave /usr/lib/liblapack.so.3gf
> liblapack.so.3gf /usr/lib/lapack/liblapack.so.3
> + exit 0
> Setting up liblapack3gf (3.5.0-4) ...
> Setting up libtorque2 (2.4.16+dfsg-1.5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up psi3 (3.4.0-5) ...
> Setting up quantum-espresso-data (5.1+dfsg-3) ...
> Setting up libibverbs1 (1.1.8-1) ...
> + set -e
> + [ configure = configure ]
> + getent group rdma
> + [ configure = configure ]
> + ldconfig
> Setting up mpi-default-bin (1.0.2+nmu2) ...
> Setting up tasksel-data (3.29) ...
> + set -e
> + dpkg --compare-versions 3.14.1 lt 3.14
> Setting up tasksel (3.29) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/tasksel.postinst
> configure 3.14.1
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ configure = configure ]
> + which update-menus
> + [ -x ]
> ## Running apt-get -y dist-upgrade...
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Starting
> Starting 2
> Investigating (0) libopenmpi1.6 [ amd64 ] < none -> 1.6.5-9 > ( libs )
> Broken libopenmpi1.6:amd64 Conflicts on libopenmpi1.3 [ amd64 ] < 1.4.5-1 > (
> libs )
> Considering libopenmpi1.3:amd64 0 as a solution to libopenmpi1.6:amd64 17
> Added libopenmpi1.3:amd64 to the remove list
> Broken libopenmpi1.6:amd64 Conflicts on openmpi-libs0 [ amd64 ] < none > (
> none )
> Considering libopenmpi1.3:amd64 0 as a solution to libopenmpi1.6:amd64 17
> Added libopenmpi1.3:amd64 to the remove list
> Fixing libopenmpi1.6:amd64 via remove of libopenmpi1.3:amd64
> Fixing libopenmpi1.6:amd64 via remove of libopenmpi1.3:amd64
> Investigating (0) libblacs-openmpi1 [ amd64 ] < none -> 1.1-33 > ( libs )
> Broken libblacs-openmpi1:amd64 Breaks on libblacs-mpi1 [ amd64 ] < 1.1-31 > (
> libs ) (< 1.1-31.2)
> Considering libblacs-mpi1:amd64 -1 as a solution to libblacs-openmpi1:amd64 3
> Added libblacs-mpi1:amd64 to the remove list
> Fixing libblacs-openmpi1:amd64 via remove of libblacs-mpi1:amd64
> Investigating (0) libscalapack-openmpi1 [ amd64 ] < none -> 1.8.0-12 > ( libs
> )
> Broken libscalapack-openmpi1:amd64 Breaks on libscalapack-mpi1 [ amd64 ] <
> 1.8.0-9 > ( libs ) (< 1.8.0-9.1)
> Considering libscalapack-mpi1:amd64 -2 as a solution to
> libscalapack-openmpi1:amd64 2
> Added libscalapack-mpi1:amd64 to the remove list
> Fixing libscalapack-openmpi1:amd64 via remove of libscalapack-mpi1:amd64
> Done
> The following packages will be REMOVED:
> libblacs-mpi1 libopenmpi1.3 libscalapack-mpi1
> The following NEW packages will be installed:
> abinit-data aces3-data acl dbus dmsetup file gcc-4.9-base ifupdown init
> init-system-helpers iproute2 isc-dhcp-client isc-dhcp-common
> libalgorithm-c3-perl libarchive-extract-perl libatm1 libaudit-common
> libaudit1 libblacs-openmpi1 libblas-common libcap-ng0 libcap2 libcap2-bin
> libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl
> libcpan-meta-perl libcryptsetup4 libdata-optlist-perl libdata-section-perl
> libdb5.3 libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdns-export100
> libelpa0 libexpat1 libfcgi-perl libffi6 libfftw3-double3 libfftw3-long3
> libfftw3-single3 libgcrypt20 libgdbm3 libgpg-error0 libhwloc-plugins
> libhwloc5 libirs-export91 libisc-export95 libisccfg-export90 libkmod2
> liblog-message-perl liblog-message-simple-perl libltdl7 libmagic1
> libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl
> libmro-compat-perl libopenmpi1.6 libpackage-constants-perl libpam-cap
> libpam-systemd libparams-util-perl libpciaccess0 libpcre3 libpod-latex-perl
> libpod-readme-perl libprocps3 libpython2.7 libpython2.7-minimal
> libpython2.7-stdlib libregexp-common-perl libscalapack-openmpi1
> libsmartcols1 libsoftware-license-perl libsqlite3-0 libssl1.0.0
> libsub-exporter-perl libsub-install-perl libsystemd0 libterm-ui-perl
> libtext-soundex-perl libtext-template-perl libudev1 libxc1 libxml2
> libxtables10 mime-support netbase ocl-icd-libopencl1 openmx-data perl
> perl-modules procps psmisc rename sgml-base startpar systemd systemd-sysv
> udev xml-core
> The following packages will be upgraded:
> abinit aces3 apt apt-utils base-passwd bsdutils coreutils cp2k cp2k-data
> dpkg grep initscripts libapt-pkg4.12 libblas3 libc-bin libfftw3-3 libgcc1
> libgfortran3 libgomp1 libpam-modules libpam-modules-bin libpam0g
> libquadmath0 libsc-data libsc7 libselinux1 libsemanage-common libsemanage1
> libstdc++6 login mount mpqc nvi nwchem nwchem-data openmpi-bin
> openmpi-checkpoint openmpi-common openmx passwd quantum-espresso sysv-rc
> sysvinit sysvinit-utils util-linux
> 45 upgraded, 104 newly installed, 3 to remove and 0 not upgraded.
> Need to get 242 MB of archives.
> After this operation, 709 MB of additional disk space will be used.
> Get:1 http://localhost/debian/ jessie/main cp2k amd64 2.5.1-3 [9402 kB]
> Get:2 http://localhost/debian/ jessie/main cp2k-data all 2.5.1-3 [17.6 MB]
> Get:3 http://localhost/debian/ jessie/main gcc-4.9-base amd64 4.9.1-19 [158
> kB]
> Get:4 http://localhost/debian/ jessie/main libgcc1 amd64 1:4.9.1-19 [39.5 kB]
> Get:5 http://localhost/debian/ jessie/main libquadmath0 amd64 4.9.1-19 [129
> kB]
> Get:6 http://localhost/debian/ jessie/main libgfortran3 amd64 4.9.1-19 [255
> kB]
> Get:7 http://localhost/debian/ jessie/main libblas-common amd64
> 1.2.20110419-10 [8496 B]
> Get:8 http://localhost/debian/ jessie/main libblas3 amd64 1.2.20110419-10
> [167 kB]
> Get:9 http://localhost/debian/ jessie/main libltdl7 amd64 2.4.2-1.11 [45.2 kB]
> Get:10 http://localhost/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB]
> Get:11 http://localhost/debian/ jessie/main libstdc++6 amd64 4.9.1-19 [273 kB]
> Get:12 http://localhost/debian/ jessie/main libsc7 amd64 2.3.1-16 [2383 kB]
> Get:13 http://localhost/debian/ jessie/main mpqc amd64 2.3.1-16 [88.1 kB]
> Get:14 http://localhost/debian/ jessie/main libsc-data all 2.3.1-16 [121 kB]
> Get:15 http://localhost/debian/ jessie/main libelpa0 amd64 2013.11.008-2
> [88.9 kB]
> Get:16 http://localhost/debian/ jessie/main libgomp1 amd64 4.9.1-19 [37.8 kB]
> Get:17 http://localhost/debian/ jessie/main libfftw3-3 amd64 3.3.4-1.1 [18.6
> kB]
> Get:18 http://localhost/debian/ jessie/main libfftw3-long3 amd64 3.3.4-1.1
> [312 kB]
> Get:19 http://localhost/debian/ jessie/main libfftw3-single3 amd64 3.3.4-1.1
> [754 kB]
> Get:20 http://localhost/debian/ jessie/main libfftw3-double3 amd64 3.3.4-1.1
> [722 kB]
> Get:21 http://localhost/debian/ jessie/main libscalapack-openmpi1 amd64
> 1.8.0-12 [2184 kB]
> Get:22 http://localhost/debian/ jessie/main quantum-espresso amd64 5.1+dfsg-3
> [10.1 MB]
> Get:23 http://localhost/debian/ jessie/main nwchem amd64 6.5+r26243-2 [10.8
> MB]
> Get:24 http://localhost/debian/ jessie/main nwchem-data all 6.5+r26243-2
> [5839 kB]
> Get:25 http://localhost/debian/ jessie/main libpython2.7-minimal amd64
> 2.7.8-11 [374 kB]
> Get:26 http://localhost/debian/ jessie/main mime-support all 3.57 [35.8 kB]
> Get:27 http://localhost/debian/ jessie/main libdb5.3 amd64 5.3.28-6 [679 kB]
> Get:28 http://localhost/debian/ jessie/main libexpat1 amd64 2.1.0-6+b3 [80.3
> kB]
> Get:29 http://localhost/debian/ jessie/main libffi6 amd64 3.1-2 [19.8 kB]
> Get:30 http://localhost/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1 [438
> kB]
> Get:31 http://localhost/debian/ jessie/main libssl1.0.0 amd64 1.0.1j-1 [1032
> kB]
> Get:32 http://localhost/debian/ jessie/main libpython2.7-stdlib amd64
> 2.7.8-11 [1841 kB]
> Get:33 http://localhost/debian/ jessie/main libpython2.7 amd64 2.7.8-11 [1080
> kB]
> Get:34 http://localhost/debian/ jessie/main openmpi-checkpoint amd64 1.6.5-9
> [96.0 kB]
> Get:35 http://localhost/debian/ jessie/main openmpi-bin amd64 1.6.5-9 [154 kB]
> Get:36 http://localhost/debian/ jessie/main openmpi-common all 1.6.5-9 [111
> kB]
> Get:37 http://localhost/debian/ jessie/main aces3-data all 3.0.8-1 [10.4 MB]
> Get:38 http://localhost/debian/ jessie/main aces3 amd64 3.0.8-1 [43.7 MB]
> Get:39 http://localhost/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9 [1468
> kB]
> Get:40 http://localhost/debian/ jessie/main libblacs-openmpi1 amd64 1.1-33
> [56.8 kB]
> Get:41 http://localhost/debian/ jessie/main libxc1 amd64 2.1.0-2 [283 kB]
> Get:42 http://localhost/debian/ jessie/main libgpg-error0 amd64 1.17-2 [81.7
> kB]
> Get:43 http://localhost/debian/ jessie/main libgcrypt20 amd64 1.6.2-4 [389 kB]
> Get:44 http://localhost/debian/ jessie/main libsystemd0 amd64 215-5+b1 [82.3
> kB]
> Get:45 http://localhost/debian/ jessie/main bsdutils amd64 1:2.25.2-2 [93.1
> kB]
> Get:46 http://localhost/debian/ jessie/main libpcre3 amd64 1:8.35-3.1 [320 kB]
> Get:47 http://localhost/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB]
> Get:48 http://localhost/debian/ jessie/main coreutils amd64 8.23-3 [2721 kB]
> Get:49 http://localhost/debian/ jessie/main dpkg amd64 1.17.21 [2843 kB]
> Get:50 http://localhost/debian/ jessie/main grep amd64 2.20-4 [324 kB]
> Get:51 http://localhost/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5
> kB]
> Get:52 http://localhost/debian/ jessie/main libaudit1 amd64 1:2.4-1 [44.2 kB]
> Get:53 http://localhost/debian/ jessie/main libcap2 amd64 1:2.24-6 [15.1 kB]
> Get:54 http://localhost/debian/ jessie/main libudev1 amd64 215-5+b1 [49.4 kB]
> Get:55 http://localhost/debian/ jessie/main libgdbm3 amd64 1.8.3-13+b1 [30.1
> kB]
> Get:56 http://localhost/debian/ jessie/main perl amd64 5.20.1-2 [2611 kB]
> Get:57 http://localhost/debian/ jessie/main perl-modules all 5.20.1-2 [2571
> kB]
> Get:58 http://localhost/debian/ jessie/main init-system-helpers all 1.21
> [13.9 kB]
> Get:59 http://localhost/debian/ jessie/main libsmartcols1 amd64 2.25.2-2 [109
> kB]
> Get:60 http://localhost/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB]
> Get:61 http://localhost/debian/ jessie/main sysvinit-utils amd64 2.88dsf-57
> [84.5 kB]
> Get:62 http://localhost/debian/ jessie/main sysv-rc all 2.88dsf-57 [83.0 kB]
> Get:63 http://localhost/debian/ jessie/main mount amd64 2.25.2-2 [167 kB]
> Get:64 http://localhost/debian/ jessie/main initscripts amd64 2.88dsf-57
> [87.3 kB]
> Get:65 http://localhost/debian/ jessie/main util-linux amd64 2.25.2-2 [844 kB]
> Get:66 http://localhost/debian/ jessie/main libdevmapper1.02.1 amd64
> 2:1.02.90-2 [145 kB]
> Get:67 http://localhost/debian/ jessie/main dmsetup amd64 2:1.02.90-2 [68.8
> kB]
> Get:68 http://localhost/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-3
> [103 kB]
> Get:69 http://localhost/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB]
> Get:70 http://localhost/debian/ jessie/main libprocps3 amd64 2:3.3.9-8 [56.3
> kB]
> Get:71 http://localhost/debian/ jessie/main procps amd64 2:3.3.9-8 [235 kB]
> Get:72 http://localhost/debian/ jessie/main udev amd64 215-5+b1 [875 kB]
> Get:73 http://localhost/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB]
> Get:74 http://localhost/debian/ jessie/main libcap2-bin amd64 1:2.24-6 [25.1
> kB]
> Get:75 http://localhost/debian/ jessie/main libpam0g amd64 1.1.8-3.1 [126 kB]
> Get:76 http://localhost/debian/ jessie/main systemd amd64 215-5+b1 [2530 kB]
> Get:77 http://localhost/debian/ jessie/main systemd-sysv amd64 215-5+b1 [29.1
> kB]
> Get:78 http://localhost/debian/ jessie/main init amd64 1.21 [4634 B]
> Get:79 http://localhost/debian/ jessie/main libpam-modules-bin amd64
> 1.1.8-3.1 [104 kB]
> Get:80 http://localhost/debian/ jessie/main libpam-modules amd64 1.1.8-3.1
> [305 kB]
> Get:81 http://localhost/debian/ jessie/main login amd64 1:4.2-2+b2 [718 kB]
> Get:82 http://localhost/debian/ jessie/main sysvinit amd64 2.88dsf-57 [99.9
> kB]
> Get:83 http://localhost/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.3 [780
> kB]
> Get:84 http://localhost/debian/ jessie/main apt amd64 1.0.9.3 [1100 kB]
> Get:85 http://localhost/debian/ jessie/main libdebconfclient0 amd64 0.192
> [46.2 kB]
> Get:86 http://localhost/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB]
> Get:87 http://localhost/debian/ jessie/main libc-bin amd64 2.19-13 [1282 kB]
> Get:88 http://localhost/debian/ jessie/main libsemanage-common all 2.3-1
> [24.6 kB]
> Get:89 http://localhost/debian/ jessie/main libsemanage1 amd64 2.3-1 [88.2 kB]
> Get:90 http://localhost/debian/ jessie/main libmagic1 amd64 1:5.20-2 [243 kB]
> Get:91 http://localhost/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-4 [797
> kB]
> Get:92 http://localhost/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3
> kB]
> Get:93 http://localhost/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB]
> Get:94 http://localhost/debian/ jessie/main libdbus-1-3 amd64 1.8.8-2 [166 kB]
> Get:95 http://localhost/debian/ jessie/main libisc-export95 amd64
> 1:9.9.5.dfsg-5 [139 kB]
> Get:96 http://localhost/debian/ jessie/main libdns-export100 amd64
> 1:9.9.5.dfsg-5 [454 kB]
> Get:97 http://localhost/debian/ jessie/main libisccfg-export90 amd64
> 1:9.9.5.dfsg-5 [39.6 kB]
> Get:98 http://localhost/debian/ jessie/main libirs-export91 amd64
> 1:9.9.5.dfsg-5 [37.4 kB]
> Get:99 http://localhost/debian/ jessie/main dbus amd64 1.8.8-2 [285 kB]
> Get:100 http://localhost/debian/ jessie/main libpam-systemd amd64 215-5+b1
> [118 kB]
> Get:101 http://localhost/debian/ jessie/main libpciaccess0 amd64 0.13.2-3
> [47.1 kB]
> Get:102 http://localhost/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB]
> Get:103 http://localhost/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1
> [33.5 kB]
> Get:104 http://localhost/debian/ jessie/main passwd amd64 1:4.2-2+b2 [956 kB]
> Get:105 http://localhost/debian/ jessie/main apt-utils amd64 1.0.9.3 [367 kB]
> Get:106 http://localhost/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB]
> Get:107 http://localhost/debian/ jessie/main ifupdown amd64 0.7.49 [66.5 kB]
> Get:108 http://localhost/debian/ jessie/main isc-dhcp-common amd64 4.3.1-5
> [211 kB]
> Get:109 http://localhost/debian/ jessie/main isc-dhcp-client amd64 4.3.1-5
> [249 kB]
> Get:110 http://localhost/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1
> [67.6 kB]
> Get:111 http://localhost/debian/ jessie/main netbase all 5.3 [19.0 kB]
> Get:112 http://localhost/debian/ jessie/main file amd64 1:5.20-2 [58.3 kB]
> Get:113 http://localhost/debian/ jessie/main abinit-data all 7.8.2-2 [11.9 MB]
> Get:114 http://localhost/debian/ jessie/main libalgorithm-c3-perl all 0.09-1
> [11.9 kB]
> Get:115 http://localhost/debian/ jessie/main libarchive-extract-perl all
> 0.72-1 [24.8 kB]
> Get:116 http://localhost/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213
> kB]
> Get:117 http://localhost/debian/ jessie/main libfcgi-perl amd64 0.77-1+b1
> [39.1 kB]
> Get:118 http://localhost/debian/ jessie/main libcgi-fast-perl all 1:2.04-1
> [10.9 kB]
> Get:119 http://localhost/debian/ jessie/main libclass-c3-perl all 0.26-1
> [22.9 kB]
> Get:120 http://localhost/debian/ jessie/main libclass-c3-xs-perl amd64
> 0.13-2+b1 [15.2 kB]
> Get:121 http://localhost/debian/ jessie/main libcpan-meta-perl all 2.142690-1
> [125 kB]
> Get:122 http://localhost/debian/ jessie/main libparams-util-perl amd64
> 1.07-2+b1 [23.5 kB]
> Get:123 http://localhost/debian/ jessie/main libsub-install-perl all 0.928-1
> [11.4 kB]
> Get:124 http://localhost/debian/ jessie/main libdata-optlist-perl all 0.109-1
> [10.6 kB]
> Get:125 http://localhost/debian/ jessie/main libmro-compat-perl all 0.12-1
> [13.2 kB]
> Get:126 http://localhost/debian/ jessie/main libsub-exporter-perl all 0.986-1
> [49.9 kB]
> Get:127 http://localhost/debian/ jessie/main libdata-section-perl all
> 0.200006-1 [13.4 kB]
> Get:128 http://localhost/debian/ jessie/main liblog-message-perl all 0.8-1
> [26.0 kB]
> Get:129 http://localhost/debian/ jessie/main liblog-message-simple-perl all
> 0.10-2 [8126 B]
> Get:130 http://localhost/debian/ jessie/main libmodule-build-perl all
> 0.421000-2 [265 kB]
> Get:131 http://localhost/debian/ jessie/main libmodule-pluggable-perl all
> 5.1-1 [25.0 kB]
> Get:132 http://localhost/debian/ jessie/main libmodule-signature-perl all
> 0.73-1 [31.6 kB]
> Get:133 http://localhost/debian/ jessie/main libpackage-constants-perl all
> 0.04-1 [5820 B]
> Get:134 http://localhost/debian/ jessie/main libpam-cap amd64 1:2.24-6 [12.3
> kB]
> Get:135 http://localhost/debian/ jessie/main libpod-latex-perl all 0.61-1
> [34.7 kB]
> Get:136 http://localhost/debian/ jessie/main libregexp-common-perl all
> 2013031301-1 [173 kB]
> Get:137 http://localhost/debian/ jessie/main libpod-readme-perl all 0.11-1
> [15.3 kB]
> Get:138 http://localhost/debian/ jessie/main libtext-template-perl all 1.46-1
> [53.1 kB]
> Get:139 http://localhost/debian/ jessie/main libsoftware-license-perl all
> 0.103010-3 [119 kB]
> Get:140 http://localhost/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1
> kB]
> Get:141 http://localhost/debian/ jessie/main libtext-soundex-perl amd64
> 3.4-1+b2 [13.7 kB]
> Get:142 http://localhost/debian/ jessie/main nvi amd64 1.81.6-11+b1 [247 kB]
> Get:143 http://localhost/debian/ jessie/main psmisc amd64 22.21-2 [119 kB]
> Get:144 http://localhost/debian/ jessie/main rename all 0.20-3 [12.4 kB]
> Get:145 http://localhost/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB]
> Get:146 http://localhost/debian/ jessie/main abinit amd64 7.8.2-2 [7328 kB]
> Get:147 http://localhost/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3
> [15.2 kB]
> Get:148 http://localhost/debian/ jessie/main openmx amd64 3.7.6-1 [909 kB]
> Get:149 http://localhost/debian/ jessie/main openmx-data all 3.7.6-1 [69.0 MB]
> Extracting templates from packages: 20%
Extracting templates from packages: 40%
Extracting templates from packages: 60%
Extracting templates from packages: 80%
Extracting templates from packages: 100%
> Preconfiguring packages ...
> Fetched 242 MB in 7s (30.5 MB/s)
> (Reading database ... 11268 files and directories currently installed.)
> Preparing to replace cp2k 2.2.426-8 (using .../cp2k_2.5.1-3_amd64.deb) ...
> Unpacking replacement cp2k ...
> Preparing to replace cp2k-data 2.2.426-8 (using
> .../cp2k-data_2.5.1-3_all.deb) ...
> Unpacking replacement cp2k-data ...
> Selecting previously unselected package gcc-4.9-base:amd64.
> Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.1-19_amd64.deb) ...
> Setting up gcc-4.9-base:amd64 (4.9.1-19) ...
> (Reading database ... 11757 files and directories currently installed.)
> Preparing to replace libgcc1:amd64 1:4.7.2-5 (using
> .../libgcc1_1%3a4.9.1-19_amd64.deb) ...
> Unpacking replacement libgcc1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgcc1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgcc1:amd64.postrm
> Setting up libgcc1:amd64 (1:4.9.1-19) ...
> + docdir=/usr/share/doc/libgcc1
> + [ -d /usr/share/doc/libgcc1 ]
> + [ ! -h /usr/share/doc/libgcc1 ]
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11757 files and directories currently installed.)
> Preparing to replace libquadmath0:amd64 4.7.2-5 (using
> .../libquadmath0_4.9.1-19_amd64.deb) ...
> Unpacking replacement libquadmath0:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libgfortran3:amd64 4.7.2-5 (using
> .../libgfortran3_4.9.1-19_amd64.deb) ...
> Unpacking replacement libgfortran3:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Selecting previously unselected package libblas-common.
> Unpacking libblas-common (from .../libblas-common_1.2.20110419-10_amd64.deb)
> ...
> Preparing to replace libblas3 1.2.20110419-5 (using
> .../libblas3_1.2.20110419-10_amd64.deb) ...
> + set -e
> + [ upgrade = upgrade ]
> + update-alternatives --display libblas.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement libblas3 ...
> Selecting previously unselected package libltdl7:amd64.
> Unpacking libltdl7:amd64 (from .../libltdl7_2.4.2-1.11_amd64.deb) ...
> Selecting previously unselected package libhwloc5:amd64.
> Unpacking libhwloc5:amd64 (from .../libhwloc5_1.10.0-3_amd64.deb) ...
> Preparing to replace libstdc++6:amd64 4.7.2-5 (using
> .../libstdc++6_4.9.1-19_amd64.deb) ...
> Unpacking replacement libstdc++6:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libgfortran3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libhwloc5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libltdl7:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libquadmath0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgfortran3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libhwloc5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libltdl7:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libquadmath0:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.prerm
> Setting up libstdc++6:amd64 (4.9.1-19) ...
> + docdir=/usr/share/doc/libstdc++6
> + [ -d /usr/share/doc/libstdc++6 ]
> + [ ! -h /usr/share/doc/libstdc++6 ]
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11790 files and directories currently installed.)
> Preparing to replace libsc7 2.3.1-14 (using .../libsc7_2.3.1-16_amd64.deb) ...
> Unpacking replacement libsc7 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace mpqc 2.3.1-14 (using .../mpqc_2.3.1-16_amd64.deb) ...
> Unpacking replacement mpqc ...
> Preparing to replace libsc-data 2.3.1-14 (using
> .../libsc-data_2.3.1-16_all.deb) ...
> Unpacking replacement libsc-data ...
> Selecting previously unselected package libelpa0.
> Unpacking libelpa0 (from .../libelpa0_2013.11.008-2_amd64.deb) ...
> Preparing to replace libgomp1:amd64 4.7.2-5 (using
> .../libgomp1_4.9.1-19_amd64.deb) ...
> Unpacking replacement libgomp1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libfftw3-3:amd64 3.3.2-3.1 (using
> .../libfftw3-3_3.3.4-1.1_amd64.deb) ...
> Unpacking replacement libfftw3-3:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Selecting previously unselected package libfftw3-long3:amd64.
> Unpacking libfftw3-long3:amd64 (from .../libfftw3-long3_3.3.4-1.1_amd64.deb)
> ...
> Selecting previously unselected package libfftw3-single3:amd64.
> Unpacking libfftw3-single3:amd64 (from
> .../libfftw3-single3_3.3.4-1.1_amd64.deb) ...
> Selecting previously unselected package libfftw3-double3:amd64.
> Unpacking libfftw3-double3:amd64 (from
> .../libfftw3-double3_3.3.4-1.1_amd64.deb) ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libelpa0.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libfftw3-double3:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libfftw3-long3:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libfftw3-single3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgomp1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsc7.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libelpa0.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libfftw3-double3:amd64.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libfftw3-long3:amd64.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libfftw3-single3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgomp1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsc7.postrm
> (Reading database ... 11812 files and directories currently installed.)
> Removing libscalapack-mpi1 ...
> + set -e
> + [ remove = remove ]
> + ldconfig
> Selecting previously unselected package libscalapack-openmpi1.
> (Reading database ... 11806 files and directories currently installed.)
> Unpacking libscalapack-openmpi1 (from
> .../libscalapack-openmpi1_1.8.0-12_amd64.deb) ...
> Preparing to replace quantum-espresso 5.0-1 (using
> .../quantum-espresso_5.1+dfsg-3_amd64.deb) ...
> Unpacking replacement quantum-espresso ...
> Preparing to replace nwchem 6.1-6 (using .../nwchem_6.5+r26243-2_amd64.deb)
> ...
> Unpacking replacement nwchem ...
> Preparing to replace nwchem-data 6.1-6 (using
> .../nwchem-data_6.5+r26243-2_all.deb) ...
> Unpacking replacement nwchem-data ...
> Selecting previously unselected package libpython2.7-minimal:amd64.
> Unpacking libpython2.7-minimal:amd64 (from
> .../libpython2.7-minimal_2.7.8-11_amd64.deb) ...
> Selecting previously unselected package mime-support.
> Unpacking mime-support (from .../mime-support_3.57_all.deb) ...
> Selecting previously unselected package libdb5.3:amd64.
> Unpacking libdb5.3:amd64 (from .../libdb5.3_5.3.28-6_amd64.deb) ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libdb5.3:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpython2.7-minimal:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libscalapack-openmpi1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mime-support.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libdb5.3:amd64.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpython2.7-minimal:amd64.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libscalapack-openmpi1.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpython2.7-minimal:amd64.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mime-support.prerm
> Setting up libdb5.3:amd64 (5.3.28-6) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Selecting previously unselected package libexpat1:amd64.
> (Reading database ... 12205 files and directories currently installed.)
> Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-6+b3_amd64.deb) ...
> Selecting previously unselected package libffi6:amd64.
> Unpacking libffi6:amd64 (from .../libffi6_3.1-2_amd64.deb) ...
> Selecting previously unselected package libsqlite3-0:amd64.
> Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.8.7.1-1_amd64.deb) ...
> Selecting previously unselected package libssl1.0.0:amd64.
> Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1j-1_amd64.deb) ...
> Selecting previously unselected package libpython2.7-stdlib:amd64.
> Unpacking libpython2.7-stdlib:amd64 (from
> .../libpython2.7-stdlib_2.7.8-11_amd64.deb) ...
> Selecting previously unselected package libpython2.7:amd64.
> Unpacking libpython2.7:amd64 (from .../libpython2.7_2.7.8-11_amd64.deb) ...
> Preparing to replace openmpi-checkpoint 1.4.5-1 (using
> .../openmpi-checkpoint_1.6.5-9_amd64.deb) ...
> Unpacking replacement openmpi-checkpoint ...
> Preparing to replace openmpi-bin 1.4.5-1 (using
> .../openmpi-bin_1.6.5-9_amd64.deb) ...
> + set -e
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement openmpi-bin ...
> Preparing to replace openmpi-common 1.4.5-1 (using
> .../openmpi-common_1.6.5-9_all.deb) ...
> Unpacking replacement openmpi-common ...
> Selecting previously unselected package aces3-data.
> Unpacking aces3-data (from .../aces3-data_3.0.8-1_all.deb) ...
> dpkg: error processing /var/cache/apt/archives/aces3-data_3.0.8-1_all.deb
> (--unpack):
> trying to overwrite '/usr/share/aces3/GENBAS', which is also in package aces3
> 3.0.6-7
> dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
> Preparing to replace aces3 3.0.6-7 (using .../aces3_3.0.8-1_amd64.deb) ...
> Unpacking replacement aces3 ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libexpat1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libffi6:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpython2.7:amd64.postinst
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libsqlite3-0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libssl1.0.0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/openmpi-bin.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libexpat1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libffi6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsqlite3-0:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libssl1.0.0:amd64.postrm
> Dpkg hook: enabling sh trace for
> /var/lib/dpkg/info/libpython2.7-stdlib:amd64.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/openmpi-bin.prerm
> Errors were encountered while processing:
> /var/cache/apt/archives/aces3-data_3.0.8-1_all.deb
> E: Sub-process /usr/bin/dpkg returned an error code (1)
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2014/11/14/debichem-abinitio.log
It is reproducible by installing your package in a clean chroot, using
the debconf Noninteractive frontend, and priority: critical.
This looks like a bug in aces3 or aces3-data. However, both aces3 and
aces3-data can be upgraded safely (ie. the test for them succeed). It
also only occurs when testing debichem-abinitio. Hence the bug against
that package.
Lucas
--- End Message ---
--- Begin Message ---
Control: reassign -1 aces3
Control: merge 768212 -1
On Fri, 14 Nov 2014 13:14:52 +0100 Lucas Nussbaum
<lu...@lucas-nussbaum.net> wrote:
> This looks like a bug in aces3 or aces3-data.
And it is. It is a duplicate of 768212.
> However, both aces3
> and aces3-data can be upgraded safely (ie. the test for them succeed).
@Lucas: No idea why you didn't find it than. Maybe interesting for your
auto-tester to find out.
Paul
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Description: OpenPGP digital signature
--- End Message ---
