Your message dated Fri, 02 May 2014 22:48:49 +0000 with message-id <e1wgmg9-0003yi...@franck.debian.org> and subject line Bug#746624: fixed in python-biopython 1.63+dfsg-2 has caused the Debian Bug report #746624, regarding python-biopython: FTBFS - t_coffee needs HOME or TMP to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 746624: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=746624 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-biopython Version: 1.63+dfsg-1 Severity: serious Justification: fails to build from source (but built successfully in the past) Builds of python-biopython on the autobuilders, which decline to provide home directories, have been failing: ApplicationError: Command 't_coffee -infile Fasta/fa01' returned non-zero exit status 135, '--ERROR: : Could not set a HOME directory.Set any of the following environement variables to some suitable location: HOME, HOME_4_TCOFFEE, TMP or TEMP [FATAL:T-COFFEE]' and likewise for the other two t_coffee tests. Please arrange to point one of those variables to a temporary directory in the build tree. Thanks!
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--- Begin Message ---Source: python-biopython Source-Version: 1.63+dfsg-2 We believe that the bug you reported is fixed in the latest version of python-biopython, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 746...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated python-biopython package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 02 May 2014 23:14:50 +0200 Source: python-biopython Binary: python-biopython python3-biopython python-biopython-doc python-biopython-sql python3-biopython-sql Architecture: source amd64 all Version: 1.63+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: python-biopython - Python library for bioinformatics (implemented in Python 2) python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema (Python 2) python3-biopython - Python library for bioinformatics (implemented in Python 3) python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Closes: 746624 Changes: python-biopython (1.63+dfsg-2) unstable; urgency=medium . * Force writable HOME to make sure t-coffee test will pass Closes: #746624 Checksums-Sha1: bcd2bb372577e4ae08ce92280483013fa1e4c30c 2876 python-biopython_1.63+dfsg-2.dsc 3e27831d7c23397d6ccd5bab952a2cfe1777b8d5 13464 python-biopython_1.63+dfsg-2.debian.tar.xz 74818c1303daee3afc20457daf9101d9584ca821 1135294 python-biopython_1.63+dfsg-2_amd64.deb bef891459faa7a3555fc602378ec3a2e20189262 1100162 python3-biopython_1.63+dfsg-2_amd64.deb cfecdce1d55ea5ebc5a8a38c04a40ab498e047f3 9643380 python-biopython-doc_1.63+dfsg-2_all.deb a8886418110e7e73870325fbad0b6212251f9d56 26746 python-biopython-sql_1.63+dfsg-2_all.deb ca13554e7d4ca5497861e6af89c1e82522e20c78 26724 python3-biopython-sql_1.63+dfsg-2_all.deb Checksums-Sha256: ec398f468f433a21b6f4f7b4be8333dfc0703aa0ee5007201785497926c592cd 2876 python-biopython_1.63+dfsg-2.dsc 4ca6c588d7b2e2272d0d2165cc17e8ff9e0e772be6723de804d934d9e218c23e 13464 python-biopython_1.63+dfsg-2.debian.tar.xz 2ee201d9433d4bab9b5aa4dcacd037828d42e06885215d42adfb7d17ced4c0a8 1135294 python-biopython_1.63+dfsg-2_amd64.deb 89d674d78ff149705c40362ce9f93f20f2a2afffa977e1eaa78a637a77c18e6a 1100162 python3-biopython_1.63+dfsg-2_amd64.deb 79a3092551b201feb9ab6b0d096e681a0361b4e18518036ac03424bd95f6b5e8 9643380 python-biopython-doc_1.63+dfsg-2_all.deb f766d9d58631958f6a81bf9f7d191dc46fbea31b0571123201f1c71344efd693 26746 python-biopython-sql_1.63+dfsg-2_all.deb 2759f1efb62991a7363b8e6df0bff431f469596c5ab1ac05f2abebe77799e54a 26724 python3-biopython-sql_1.63+dfsg-2_all.deb Files: f531e4aaa6ad75a0d4e3c39817ea45e2 1135294 python optional python-biopython_1.63+dfsg-2_amd64.deb 62c7c26539477067eea45a716d7da85a 1100162 python optional python3-biopython_1.63+dfsg-2_amd64.deb 9369687968f44cae592189a534d76239 9643380 doc optional python-biopython-doc_1.63+dfsg-2_all.deb 4ed5f4267f5d45e14823b49e75477667 26746 python optional python-biopython-sql_1.63+dfsg-2_all.deb b4c45cc55bc94c9e17a777b6acfdff26 26724 python optional python3-biopython-sql_1.63+dfsg-2_all.deb 37601897642399efbde1d743525097a0 2876 python optional python-biopython_1.63+dfsg-2.dsc 087dfce84cc5f137d72bb145b02c2292 13464 python optional python-biopython_1.63+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJTZB5oAAoJEFeKBJTRxkbRHbEP/i/STmMOq0QSkFfUx/Tv9LA6 14f8McRDyUkHHFRao5/BwEpICk86vhWc5EIcJKCGG3J73j6bHNOHE91b/7HbODYf Yly/h9sF5SAmvbxezYW6ewTv+faXMNO8jAo6yftpnG7bKEuT6c62OWJnBmVthD+9 w1AD9SRv8PYtQIdIjbSrZk31sserxg0h+xFoyR3sJFrsfOxBpeiwvfIP70deEPOv 2ARGD2jWBhhMRvt6Csss0wnZn16Q7mQRyVpduqP+tqD7Vsr3UQnWProgLFNwS3sN Z7JlweVOzbuJ9BTZoirb1zjnhtKns/OPCLLdLZce50GNzvf5mEjj6rPH8y7nbLAE RVVLKUVvNSbj9ZF2bdrSTbd04LZ1H0OWGFAIFNLu4hHtPF+DoDS5K8NbYTtA2FRV UBL8SvYioDRD1XEfxLD8yhwfGe/P+YsfIjFJYfT47HEa5P+kfFe/uGe/5v+77hGC UFVWAkfQBsKGm3MItaLPafJybm6OB+dwefmR0eJ59vr+IWMT1LTN3UCHWGyBdYRQ baJkuNhdliZLGRdi7Blwfld8iwIg0thGrChsdz7W/OtI7e+KP+Q+q7Pm80pGcwwV JAP0G3viV/EmZGsUU8eNQojtlUfFS3I3MMdVRs4BTclKw6HOl6r6uZUImkIiGP/P X1jtPQVX0pT/0Rc6VFnf =xJP8 -----END PGP SIGNATURE-----
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