Your message dated Fri, 21 Jun 2013 11:18:00 +0000
with message-id <e1upzls-0003uq...@franck.debian.org>
and subject line Bug#706804: fixed in openmeeg 2.0.0.dfsg-5.1
has caused the Debian Bug report #706804,
regarding openmeeg: FTBFS: MatlabIO.H:116:100: error: 'BY_NAME' was not
declared in this scope
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
706804: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=706804
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: openmeeg
Version: 2.0.0.dfsg-5
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130529 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 12
> [ 2%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/vector.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/vector.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/vector.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 13
> [ 4%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/matrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/matrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/matrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 14
> [ 6%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/symmatrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/symmatrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/symmatrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 15
> [ 8%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/sparse_matrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/sparse_matrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/sparse_matrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 16
> [ 10%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/fast_sparse_matrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/fast_sparse_matrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/fast_sparse_matrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 17
> [ 12%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/MathsIO.C.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/MathsIO.C.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MathsIO.C
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 18
> [ 14%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/MatlabIO.C.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/MatlabIO.C.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.C
> In file included from /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.C:40:0:
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In static member function
> 'static matvar_t*
> OpenMEEG::maths::details::helper<OpenMEEG::SymMatrix>::set_type(matvar_t*,
> OpenMEEG::LinOpInfo&)':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:116:100: error: 'BY_NAME' was
> not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In static member function
> 'static matvar_t*
> OpenMEEG::maths::details::helper<OpenMEEG::SymMatrix>::adjust(matvar_t*)':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:125:96: error: 'BY_NAME' was not
> declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::read_sparse(mat_t*, OpenMEEG::LinOp&) const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:17: error: 'sparse_t' was
> not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:27: error: 'sparse' was not
> declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:48: error: expected
> type-specifier before 'sparse_t'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:48: error: expected '>'
> before 'sparse_t'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:48: error: expected '('
> before 'sparse_t'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:57: error: expected
> primary-expression before '>' token
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:72: error: expected ')'
> before ';' token
> In file included from /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.C:40:0:
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::write(mat_t*, const OpenMEEG::LinOp&) const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:304:41: error:
> 'COMPRESSION_ZLIB' was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::write_symmetric(mat_t*, const OpenMEEG::LinOp&)
> const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:314:90: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:315:92: error: 'MEM_CONSERVE'
> was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:317:107: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:318:44: error:
> 'COMPRESSION_NONE' was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::write_sparse(mat_t*, const OpenMEEG::LinOp&)
> const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:362:17: error: 'sparse_t' was
> not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:362:27: error: expected ';'
> before 'sparse'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:364:83: error: 'sparse' was not
> declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:364:90: error: 'MEM_CONSERVE'
> was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:365:41: error:
> 'COMPRESSION_ZLIB' was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In instantiation of 'void
> OpenMEEG::maths::MatlabIO::write(mat_t*, const OpenMEEG::LinOp&) const [with
> TYPE = OpenMEEG::Vector; mat_t = _mat_t]':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:228:44: required from here
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:303:126: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In instantiation of 'void
> OpenMEEG::maths::MatlabIO::write(mat_t*, const OpenMEEG::LinOp&) const [with
> TYPE = OpenMEEG::Matrix; mat_t = _mat_t]':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:238:52: required from here
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:303:126: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> make[3]: *** [libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/MatlabIO.C.o]
> Error 1
The full build log is available from:
http://deiv.vzpla.net/logs/2013/05/29/openmeeg_2.0.0.dfsg-5_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: openmeeg
Source-Version: 2.0.0.dfsg-5.1
We believe that the bug you reported is fixed in the latest version of
openmeeg, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 706...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sébastien Villemot <sebast...@debian.org> (supplier of updated openmeeg package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 19 Jun 2013 12:53:37 +0200
Source: openmeeg
Binary: libopenmeeg1 libopenmeeg-dev openmeeg-tools python-openmeeg
Architecture: source amd64
Version: 2.0.0.dfsg-5.1
Distribution: unstable
Urgency: low
Maintainer: NeuroDebian Team <t...@neuro.debian.net>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
libopenmeeg-dev - openmeeg library -- development files
libopenmeeg1 - library for solving EEG and MEG forward and inverse problems
openmeeg-tools - openmeeg library -- command line tools
python-openmeeg - openmeeg library -- Python bindings
Closes: 706804
Changes:
openmeeg (2.0.0.dfsg-5.1) unstable; urgency=low
.
* Non-maintainer upload.
* Adapt for API changes in MatIO 1.5
+ debian/patches/matio_1.5: new patch
+ debian/control: add versioned build dependency on libmatio-dev
(Closes: #706804)
* debian/patches/cmake_clean: new patch, fixes FTBFS with recent versions of
cmake
Checksums-Sha1:
169ff75569b70ac5b8846177e76a95046505716e 2324 openmeeg_2.0.0.dfsg-5.1.dsc
b8d3be7d505073c35a1da1146e1dcca6f3dbca56 16620
openmeeg_2.0.0.dfsg-5.1.debian.tar.gz
a35414cab3e8b84a6132a69b6c84d48b4cacb2d2 258600
libopenmeeg1_2.0.0.dfsg-5.1_amd64.deb
6a6bfb9cea5f30abfeb2a246728ed9ca8f608905 43092
libopenmeeg-dev_2.0.0.dfsg-5.1_amd64.deb
f902b6296a35b683cdde16cb10f65f2ae34300af 156926
openmeeg-tools_2.0.0.dfsg-5.1_amd64.deb
f0d95867a3aff5d6d7e33bcf96a68dd89049ec2c 153074
python-openmeeg_2.0.0.dfsg-5.1_amd64.deb
Checksums-Sha256:
451f92d43c79e3553dbf798e4ed17daaf078d4687050c27fa4a11b73a8729d1a 2324
openmeeg_2.0.0.dfsg-5.1.dsc
21bd61e65b18a1d830aceff28262a8fc11c2fa4c0babd92c3eece669f9aba2fa 16620
openmeeg_2.0.0.dfsg-5.1.debian.tar.gz
5a6581543510769ef95d4457be27a61d092b423f6fae5d4431e0f63748d48b26 258600
libopenmeeg1_2.0.0.dfsg-5.1_amd64.deb
454daaa63808d2ceb389401913695389b49211530fb5f589f5bce6b351dd8c48 43092
libopenmeeg-dev_2.0.0.dfsg-5.1_amd64.deb
b2eec2e78f937d96bec3846f90cdbbadb7202a60aa1b91ab4cb8c8c376310042 156926
openmeeg-tools_2.0.0.dfsg-5.1_amd64.deb
c2ef738ff8facceffded41602c6bea50ceb3c9fca7ae338a33653d8faa83ed16 153074
python-openmeeg_2.0.0.dfsg-5.1_amd64.deb
Files:
2d3ef784913254a5cef5a7cc8f0204bd 2324 science extra openmeeg_2.0.0.dfsg-5.1.dsc
221c50b2fd11b7419dee701de418afdd 16620 science extra
openmeeg_2.0.0.dfsg-5.1.debian.tar.gz
5d3a4ef9cf9c6a0c4f3a70ee129e5d54 258600 science extra
libopenmeeg1_2.0.0.dfsg-5.1_amd64.deb
e51529f6ce692ff830094ede7ac8c76e 43092 libdevel extra
libopenmeeg-dev_2.0.0.dfsg-5.1_amd64.deb
8fce4562b19e8e4d7106c5efebb220cf 156926 science extra
openmeeg-tools_2.0.0.dfsg-5.1_amd64.deb
bb41c4c730a5adc904d22e5656b8336f 153074 python extra
python-openmeeg_2.0.0.dfsg-5.1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.12 (GNU/Linux)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=qt3+
-----END PGP SIGNATURE-----
--- End Message ---
