Source: openmeeg
Version: 2.0.0.dfsg-5
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130529 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[3]: Entering directory `/«PKGBUILDDIR»/obj-x86_64-linux-gnu'
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 12
> [ 2%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/vector.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/vector.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/vector.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 13
> [ 4%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/matrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/matrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/matrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 14
> [ 6%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/symmatrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/symmatrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/symmatrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 15
> [ 8%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/sparse_matrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/sparse_matrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/sparse_matrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 16
> [ 10%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/fast_sparse_matrix.cpp.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/fast_sparse_matrix.cpp.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/fast_sparse_matrix.cpp
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 17
> [ 12%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/MathsIO.C.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/MathsIO.C.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MathsIO.C
> /usr/bin/cmake -E cmake_progress_report
> /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles 18
> [ 14%] Building CXX object
> libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/MatlabIO.C.o
> cd /«PKGBUILDDIR»/obj-x86_64-linux-gnu/libs/MatLib/MatLib && /usr/bin/c++
> -DOpenMEEGMaths_EXPORTS -O2 -g -DNDEBUG -fPIC
> -I/«PKGBUILDDIR»/contrib/matio/src -I/«PKGBUILDDIR»/contrib/matio/zlib
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/src
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/contrib/matio/zlib -I/usr/include/atlas
> -I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -I/«PKGBUILDDIR» -I/«PKGBUILDDIR»/src
> -I/«PKGBUILDDIR»/libs/MatLib/MatLib -o
> CMakeFiles/OpenMEEGMaths.dir/MatlabIO.C.o -c
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.C
> In file included from /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.C:40:0:
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In static member function
> 'static matvar_t*
> OpenMEEG::maths::details::helper<OpenMEEG::SymMatrix>::set_type(matvar_t*,
> OpenMEEG::LinOpInfo&)':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:116:100: error: 'BY_NAME' was
> not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In static member function
> 'static matvar_t*
> OpenMEEG::maths::details::helper<OpenMEEG::SymMatrix>::adjust(matvar_t*)':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:125:96: error: 'BY_NAME' was not
> declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::read_sparse(mat_t*, OpenMEEG::LinOp&) const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:17: error: 'sparse_t' was
> not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:27: error: 'sparse' was not
> declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:48: error: expected
> type-specifier before 'sparse_t'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:48: error: expected '>'
> before 'sparse_t'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:48: error: expected '('
> before 'sparse_t'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:57: error: expected
> primary-expression before '>' token
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:279:72: error: expected ')'
> before ';' token
> In file included from /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.C:40:0:
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::write(mat_t*, const OpenMEEG::LinOp&) const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:304:41: error:
> 'COMPRESSION_ZLIB' was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::write_symmetric(mat_t*, const OpenMEEG::LinOp&)
> const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:314:90: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:315:92: error: 'MEM_CONSERVE'
> was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:317:107: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:318:44: error:
> 'COMPRESSION_NONE' was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In member function 'void
> OpenMEEG::maths::MatlabIO::write_sparse(mat_t*, const OpenMEEG::LinOp&)
> const':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:362:17: error: 'sparse_t' was
> not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:362:27: error: expected ';'
> before 'sparse'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:364:83: error: 'sparse' was not
> declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:364:90: error: 'MEM_CONSERVE'
> was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:365:41: error:
> 'COMPRESSION_ZLIB' was not declared in this scope
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In instantiation of 'void
> OpenMEEG::maths::MatlabIO::write(mat_t*, const OpenMEEG::LinOp&) const [with
> TYPE = OpenMEEG::Vector; mat_t = _mat_t]':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:228:44: required from here
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:303:126: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H: In instantiation of 'void
> OpenMEEG::maths::MatlabIO::write(mat_t*, const OpenMEEG::LinOp&) const [with
> TYPE = OpenMEEG::Matrix; mat_t = _mat_t]':
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:238:52: required from here
> /«PKGBUILDDIR»/libs/MatLib/MatLib/MatlabIO.H:303:126: error: cannot convert
> 'int*' to 'size_t* {aka long unsigned int*}' for argument '5' to 'matvar_t*
> Mat_VarCreate(const char*, matio_classes, matio_types, int, size_t*, void*,
> int)'
> make[3]: *** [libs/MatLib/MatLib/CMakeFiles/OpenMEEGMaths.dir/MatlabIO.C.o]
> Error 1
The full build log is available from:
http://deiv.vzpla.net/logs/2013/05/29/openmeeg_2.0.0.dfsg-5_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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