Your message dated Thu, 16 May 2013 17:02:39 +0200
with message-id <5194f50f.8090...@biotec.tu-dresden.de>
and subject line Re: [Debian-med-packaging] Bug#707416: tophat: FTBFS:
(.text+0x1732): undefined reference to `pthread_create'
has caused the Debian Bug report #707416,
regarding tophat: FTBFS: (.text+0x1732): undefined reference to `pthread_create'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
707416: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=707416
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: tophat
Version: 2.0.8b-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130509 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> g++ -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -O3 -g -O2
> -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security
> -DNDEBUG -I/usr/include -I./SeqAn-1.3 -Wl,-z,relro -Wl,-z,relro -o
> prep_reads prep_reads.o ../src/libtophat.a -lbam -lz
> /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/libbam.a(bgzf.o): In
> function `bgzf_mt':
> (.text+0x1732): undefined reference to `pthread_create'
> /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/libbam.a(bgzf.o): In
> function `bgzf_close':
> (.text+0x1afa): undefined reference to `pthread_join'
> collect2: error: ld returned 1 exit status
The full build log is available from:
http://people.debian.org/~lucas/logs/2013/05/09/tophat_2.0.8b-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Package: tophat
Version: 2.0.8b-1
tophat builds properly with latest libboost1.49-dev (1.49.0-4)
Alex
--- End Message ---
