Your message dated Sun, 25 Sep 2011 09:33:22 +0000 with message-id <e1r7l5o-0003yn...@franck.debian.org> and subject line Bug#642035: fixed in ruby-bio 1.4.2-1 has caused the Debian Bug report #642035, regarding FTBFS: ERROR: Test "ruby1.8" failed. Exiting. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 642035: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=642035 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: ruby-bio Version: 1.4.1-2 Severity: serious Justification: fails to build from source Hello, Two tests failed, causing the package to FTBFS: 1) Failure: test_esearch_retmax_retstart(Bio::FuncTestPubmedClassMethod) [./test/functional/bio/io/test_pubmed.rb:61]: The failure may be caused by changes of NCBI PubMed. <["21920989", "21921034", "21921041", "21921046", "21921327", "21921675", "21922137", "21922275", "21922390", "21922647"]> expected but was <["21903324", "21903368", "21903579", "21903592", "21903770", "21904072", "21904608", "21904639", "21904657", "21904777"]>. 2) Failure: test_randomize_with_hash_equiprobability(Bio::TestSequenceCommon::TestSequenceCommonRandomize) [./test/unit/bio/sequence/test_common.rb:286:in `randomize_equiprobability' ./test/unit/bio/sequence/test_common.rb:296:in `test_randomize_with_hash_equiprobability']: test of chi2 < 21.666 failed (25.0). <21.666> expected to be > <25.0>. 3127 tests, 20469 assertions, 2 failures, 0 errors Full build log attached. Laurent.
ruby-bio.log.xz
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--- Begin Message ---Source: ruby-bio Source-Version: 1.4.2-1 We believe that the bug you reported is fixed in the latest version of ruby-bio, which is due to be installed in the Debian FTP archive: libbio-ruby1.8_1.4.2-1_all.deb to main/r/ruby-bio/libbio-ruby1.8_1.4.2-1_all.deb libbio-ruby_1.4.2-1_all.deb to main/r/ruby-bio/libbio-ruby_1.4.2-1_all.deb ruby-bio_1.4.2-1.debian.tar.gz to main/r/ruby-bio/ruby-bio_1.4.2-1.debian.tar.gz ruby-bio_1.4.2-1.dsc to main/r/ruby-bio/ruby-bio_1.4.2-1.dsc ruby-bio_1.4.2-1_all.deb to main/r/ruby-bio/ruby-bio_1.4.2-1_all.deb ruby-bio_1.4.2.orig.tar.gz to main/r/ruby-bio/ruby-bio_1.4.2.orig.tar.gz A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 642...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Lucas Nussbaum <lu...@debian.org> (supplier of updated ruby-bio package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 25 Sep 2011 11:01:38 +0200 Source: ruby-bio Binary: ruby-bio libbio-ruby1.8 libbio-ruby Architecture: source all Version: 1.4.2-1 Distribution: unstable Urgency: low Maintainer: Debian Ruby Extras Maintainers <pkg-ruby-extras-maintain...@lists.alioth.debian.org> Changed-By: Lucas Nussbaum <lu...@debian.org> Description: libbio-ruby - Transitional package for ruby-bio libbio-ruby1.8 - Transitional package for ruby-bio ruby-bio - Ruby tools for computational molecular biology Closes: 642035 Changes: ruby-bio (1.4.2-1) unstable; urgency=low . * New upstream version. + Fixes build failure. Closes: #642035. * fix typos in debian/copyright. * document disable-test-soap.patch. Checksums-Sha1: b73ed04118c85b7c67ae4f3e89b1177eaab780b9 2167 ruby-bio_1.4.2-1.dsc 62c2bf9230a26742a14a85457f1e4429a6a54b2a 1467417 ruby-bio_1.4.2.orig.tar.gz c0cf9234d26e06755837c98bfd8a5964d8b6b959 9286 ruby-bio_1.4.2-1.debian.tar.gz b440db7e396de78ac8f5216416d5bec697de626e 861160 ruby-bio_1.4.2-1_all.deb 48558f6edc874237fd20bbaa97216dc137e55392 49426 libbio-ruby1.8_1.4.2-1_all.deb 0b5c4195eba734576be00a7d5500efe67c544495 49418 libbio-ruby_1.4.2-1_all.deb Checksums-Sha256: 1567e489790b4d0b289d3fc42edeaa68f5fac6ca45ebc9873c8eede96f626276 2167 ruby-bio_1.4.2-1.dsc 7d9deec237d5251ab021d782d8c436c43ad7d43ce463c3cb039e770c202a5f07 1467417 ruby-bio_1.4.2.orig.tar.gz 14bb7aafbc217f8b0da4d49523a96e921432dcaa1189ba450c0d819fedff1684 9286 ruby-bio_1.4.2-1.debian.tar.gz 54bb7ef3627beed17e3a865bd137ae9adf54ff8950b9a8c4fcd598b14f638961 861160 ruby-bio_1.4.2-1_all.deb 19b65c963d725ac0607d0a26d0091325a9f0d3001e51d77bb23da743d10e8639 49426 libbio-ruby1.8_1.4.2-1_all.deb 4434ebbf63d0a9693668adee9d5cda2ab646c111e94276273b265405aa0cc781 49418 libbio-ruby_1.4.2-1_all.deb Files: 3cd8a83f460962738e5a84fffcc0cf27 2167 ruby optional ruby-bio_1.4.2-1.dsc 088c4989ad39645f8e47d40f3a9f9650 1467417 ruby optional ruby-bio_1.4.2.orig.tar.gz 4b00db4102657d91d18ccb8b1008d78f 9286 ruby optional ruby-bio_1.4.2-1.debian.tar.gz 87f2a29cd207b8adc3f1820d6e804d7e 861160 ruby optional ruby-bio_1.4.2-1_all.deb 7ee35821e4392d05e91f0064eee8a8da 49426 oldlibs optional libbio-ruby1.8_1.4.2-1_all.deb 43b191bebecd621afaa0d24d587f1fcd 49418 oldlibs optional libbio-ruby_1.4.2-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) iQIVAwUBTn7yZzkUtTL0376ZAQrLbg/+JxSonk252cOVFW5M6coFObJajCi3p26G fAqibhUNeHcxVzCy2sen4jq0UkvFDT81BgitcH7tzc1amI2HgYzDrcVrJIqMIOU4 l4ijVrbj2xOA3CMuKhGYTv1K+5P+ZGOu4aW8HZlTH+ipd5PUrx0ROUr7hmvPIrd9 UPooRJk8U/0EqGIgUhiqs+gx/nKw/PAQ+hnES4SIwWDYatNBcQljTQXPKwZaF2RJ jRtHRuXsU4B3pl1XdqYZvpbDThfIL/ZTA+Ct37VR+paXXuxo45P6Hn26QL9LqE4T ZICOu9JLbia9X4D2U1LE8JgLiYCiVD+cWHd8I+i+3SIZ12vBPUoowq/cqgrZEtjd Mjooukmkywqa69Vnl0jTGSAAzs4SiBkJIBxXsitjAKKT1awtr30wp88XRGSiouxX Kydm65IKveuvN0uXNKsLZbreGxTZn+ndEcyNdUG1evnb2qbQi2Bt31qdOJBsa5S/ 8ubxCZ+FVGgrW54XpTxU4eFlDefnkxuiVvV1gcX47GzszV6FZIefpfZAsI/pmMhT 4uy94uvPCC21s2yQz/rwdZJ+73N3VQW8VnEij8oyq5I10VwZVd0Y5e+RE301KsHD qccr3HvjV07HUkOgrddiRI+J+OBlCiCB3W9A9ptJrB8K+q5gqvRNivy7WA5mTy84 bO06rb5ABys= =236i -----END PGP SIGNATURE-----
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