Your message dated Thu, 02 Jun 2011 06:02:24 +0000
with message-id <e1qs0za-0005lt...@franck.debian.org>
and subject line Bug#627712: fixed in cdk 1:1.2.10-1
has caused the Debian Bug report #627712,
regarding libcdk-java: XML config files missing from cdk-core.jar
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
627712: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=627712
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libcdk-java
Version: 1:1.2.8-1
Severity: grave
Justification: renders package unusable
While helping the user who reported bug #627683 with the missing dependencies,
we discovered that xml data files are missing from the resulting jars, or at
least cdk-core.jar, which should give something like this output from my
git checkout:
$ jar tvf dist/jar/cdk-core.jar | grep xml
84731 Mon Jan 03 15:33:00 CET 2011
org/openscience/cdk/config/data/chemicalElements.xml
808935 Mon Jan 03 15:33:00 CET 2011 org/openscience/cdk/config/data/isotopes.xml
48081 Mon Jan 03 15:33:00 CET 2011
org/openscience/cdk/config/data/mm2_atomtypes.xml
68999 Mon Jan 03 15:33:00 CET 2011
org/openscience/cdk/config/data/mmff94_atomtypes.xml
5470 Mon Jan 03 15:33:00 CET 2011
org/openscience/cdk/config/data/mol2_atomtypes.xml
49701 Tue May 10 19:47:04 CEST 2011
org/openscience/cdk/config/data/pdb_atomtypes.xml
5302 Mon Jan 03 15:33:00 CET 2011
org/openscience/cdk/config/data/structgen_atomtypes.xml
These .xml file are missing from the Debian's version of cdk-core.jar.
I checked that the src/META-INF/core.datafiles file is in the puredist there.
And those .xml files are in that tar.gz too...
Not sure why they do not end up in the Debian's cdk-core.jar at this moment...
-- System Information:
Debian Release: wheezy/sid
APT prefers testing
APT policy: (500, 'testing'), (300, 'unstable')
Architecture: i386 (i686)
Kernel: Linux 2.6.32-5-686-bigmem (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages libcdk-java depends on:
ii default-jre-headless [java5 1:1.6-40 Standard Java or Java compatible R
ii gcj-4.4-jre-headless [java5 4.4.6-2 Java runtime environment using GIJ
ii gcj-jre-headless [java5-run 4:4.4.5-4 Java runtime environment using GIJ
ii openjdk-6-jre-headless [jav 6b18-1.8.7-2 OpenJDK Java runtime, using Hotspo
ii sun-java6-jre [java5-runtim 6.24-2 Sun Java(TM) Runtime Environment (
libcdk-java recommends no packages.
Versions of packages libcdk-java suggests:
pn jchempaint <none> (no description available)
ii jmol 12.0.40-1 Molecular Viewer
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: cdk
Source-Version: 1:1.2.10-1
We believe that the bug you reported is fixed in the latest version of
cdk, which is due to be installed in the Debian FTP archive:
cdk_1.2.10-1.debian.tar.gz
to main/c/cdk/cdk_1.2.10-1.debian.tar.gz
cdk_1.2.10-1.dsc
to main/c/cdk/cdk_1.2.10-1.dsc
cdk_1.2.10.orig.tar.gz
to main/c/cdk/cdk_1.2.10.orig.tar.gz
libcdk-java_1.2.10-1_all.deb
to main/c/cdk/libcdk-java_1.2.10-1_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 627...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Onkar Shinde <onkarshi...@ubuntu.com> (supplier of updated cdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 30 May 2011 20:50:41 +0530
Source: cdk
Binary: libcdk-java
Architecture: source all
Version: 1:1.2.10-1
Distribution: unstable
Urgency: low
Maintainer: Debian Java Maintainers
<pkg-java-maintain...@lists.alioth.debian.org>
Changed-By: Onkar Shinde <onkarshi...@ubuntu.com>
Description:
libcdk-java - Chemistry Development Kit (CDK) Java libraries
Closes: 627582 627683 627712
Changes:
cdk (1:1.2.10-1) unstable; urgency=low
.
* New upstream release. (Closes: #627582, #627712)
* debian/control
- Drop bunch of not used build dependencies - libcommons-cli-java,
libcrimson-java, libmysql-java, libpgjava, xsltproc.
- Add javahelper as build dependency to use jh_classpath and jh_depends
utilities.
* debian/rules
- Include javahelper.mk
- Remove ant-nodeps, vecmath, log4j-1.2, commons-cli from build classpath.
Build classpath is managed by upstream build system.
- Remove modules which do not contain any class files when built - inchi,
pdbcml, qsarxml.
- Add logic to generate debian/classpath file. This file is used by
jh_classpath to update classpath in manifest files. (Closes: #627683)
* debian/patches/
- 21_vecmath_lib_name.patch - Remove. Not needed anymore.
- 22_fix_build.patch - Update as per current upstream source.
Checksums-Sha1:
b8f0ebc74c1260067c1690e3e32dddfe964a3a7d 2179 cdk_1.2.10-1.dsc
68081168c20cc3e8ded28a7b89fbec031350c6f9 3898374 cdk_1.2.10.orig.tar.gz
d2a91a05f414786491946cc3bd7a992bc88ac90b 10536 cdk_1.2.10-1.debian.tar.gz
d6a5d2088307592ccbbfc57a7cd7cad550bd8ff1 9461310 libcdk-java_1.2.10-1_all.deb
Checksums-Sha256:
58d9c5704d199b7c6885da657118ac3a49a4bf2e212df6d3db63c009b597f1a1 2179
cdk_1.2.10-1.dsc
0e4196bb22b78954369fcfa2517d52220e89da669f25658921bce79383f93105 3898374
cdk_1.2.10.orig.tar.gz
404f2025db79a67b8554683a2d1dd5f9650e497290e7ef929fee443fc15ad53c 10536
cdk_1.2.10-1.debian.tar.gz
6d2fd73631e9916aa98b7be9531c0f6c7909cc149c554724c3a9814f14c405c4 9461310
libcdk-java_1.2.10-1_all.deb
Files:
f904b794bcc6797b645d252145cc9529 2179 java optional cdk_1.2.10-1.dsc
8fd60215cb6e4b52ebc8915aceb42a19 3898374 java optional cdk_1.2.10.orig.tar.gz
0bb80594389323c2d1655bf1c2293c2d 10536 java optional cdk_1.2.10-1.debian.tar.gz
916d9672d18d43ea6f8bc60a4172ad4b 9461310 java optional
libcdk-java_1.2.10-1_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)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=Jcy+
-----END PGP SIGNATURE-----
--- End Message ---
