Source: pdb2pqr Version: 1.7-1 Severity: serious Justification: fails to build from source
pdb2pqr fails to build from source on i386: | g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.7\" -DPACKAGE_STRING=\"PDB2PQR\ 1.7\" -DPACKAGE_BUGREPORT=\"ba...@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.7\" -I. -I/usr/include/python2.6 -I/usr/numpy/lib/python2.6/site-packages/numpy/core/include/numpy -g -O2 -c -o Algorithms.o Algorithms.cpp | In file included from /usr/include/python2.6/Python.h:8:0, | from Algorithms.cpp:40: | /usr/include/python2.6/pyconfig.h:1031:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] | /usr/include/features.h:163:0: note: this is the location of the previous definition | /usr/include/python2.6/pyconfig.h:1040:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] | /usr/include/features.h:165:0: note: this is the location of the previous definition | g++ -o Algorithms.so -shared Algorithms.o | collect2: ld terminated with signal 6 [Aborted] | *** glibc detected *** /usr/bin/ld: double free or corruption (!prev): 0x09e0a9c8 *** | ======= Backtrace: ========= | /lib/libc.so.6(+0x6a81a)[0x556f381a] | /lib/libc.so.6(+0x6c078)[0x556f5078] | /lib/libc.so.6(cfree+0x6d)[0x556f817d] | /usr/lib/libbfd-2.21.51-system.20110523.so(objalloc_free+0x2c)[0x55639e0c] | ======= Memory map: ======== | 08048000-080f4000 r-xp 00000000 00:68 8547 /usr/bin/ld.bfd | 080f4000-080f5000 rw-p 000ac000 00:68 8547 /usr/bin/ld.bfd | 080f5000-080f6000 rw-p 00000000 00:00 0 | 09aad000-09e8a000 rw-p 00000000 00:00 0 [heap] | 55555000-55570000 r-xp 00000000 00:68 30 /lib/ld-2.13.so | 55570000-55571000 r--p 0001b000 00:68 30 /lib/ld-2.13.so | 55571000-55572000 rw-p 0001c000 00:68 30 /lib/ld-2.13.so | 55572000-55573000 r-xp 00000000 00:00 0 [vdso] | 55573000-55578000 rw-p 00000000 00:00 0 | 55578000-55660000 r-xp 00000000 00:68 6721 /usr/lib/libbfd-2.21.51-system.20110523.so | 55660000-5566c000 rw-p 000e8000 00:68 6721 /usr/lib/libbfd-2.21.51-system.20110523.so | 5566c000-55670000 rw-p 00000000 00:00 0 | 55670000-55683000 r-xp 00000000 00:68 199 /usr/lib/libz.so.1.2.3.4 | 55683000-55684000 rw-p 00013000 00:68 199 /usr/lib/libz.so.1.2.3.4 | 55684000-55685000 rw-p 00000000 00:00 0 | 55685000-55687000 r-xp 00000000 00:68 60 /lib/libdl-2.13.so | 55687000-55688000 r--p 00001000 00:68 60 /lib/libdl-2.13.so | 55688000-55689000 rw-p 00002000 00:68 60 /lib/libdl-2.13.so | 55689000-557c7000 r-xp 00000000 00:68 33 /lib/libc-2.13.so | 557c7000-557c8000 ---p 0013e000 00:68 33 /lib/libc-2.13.so | 557c8000-557ca000 r--p 0013e000 00:68 33 /lib/libc-2.13.so | 557ca000-557cb000 rw-p 00140000 00:68 33 /lib/libc-2.13.so | 557cb000-557f7000 rw-p 00000000 00:00 0 | 557f8000-557fe000 rw-p 00000000 00:00 0 | 55800000-55821000 rw-p 00000000 00:00 0 | 55821000-55900000 ---p 00000000 00:00 0 | 55903000-5591f000 r-xp 00000000 00:68 239 /lib/libgcc_s.so.1 | 5591f000-55920000 rw-p 0001b000 00:68 239 /lib/libgcc_s.so.1 | ffc8e000-ffcaf000 rw-p 00000000 00:00 0 [stack] | make[3]: *** [Algorithms.so] Error 1 -- Jakub Wilk -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
