Package: zoem
Version: 07-333-3
Severity: important
$ zoem -d html -i mcxconvert.azm -o mcxconvert.html
zsh: segmentation fault zoem -d html -i mcxconvert.azm -o mcxconvert.html
The mcxconvert.azm file is attached to this mail.
Cheers!
-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable')
Architecture: powerpc (ppc)
Kernel: Linux 2.6.18
Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages zoem depends on:
ii libc6 2.7-10 GNU C Library: Shared libraries
zoem recommends no packages.
Versions of packages zoem suggests:
pn zoem-doc <none> (no description available)
-- no debconf information
--
Philipp Benner
\def{"man::synstyle"}{long}
\def{"man::defstyle"}{long}
\import{mcx.zmm}
\set{"man::name"}{mcx convert}
\set{"man::html-title"}{The mcx convert manual}
\set{"man::author"}{Stijn van Dongen}
\set{"man::section"}{1}
\"man::preamble"
\${html}{\"man::maketoc"}
\sec{name}{NAME}
\NAME{mcxconvert}{convert between mcx storage types}
\sec{synopsis}{SYNOPSIS}
\par{
\mcx{convert} <matrix-file-in> <matrix-file-out>\|
\mcx{convert} [--write-binary] --cone-to-stack <cat-file-in> <cat-file-out>\|
\mcx{convert} [--write-binary] --stack-to-cone <cat-file-in> <cat-file-out>
}
\disclaim_mcx{convert}
\par{
\mcx{convert}
\synoptopt{--cone-to-stack}{transform cone file to stack file}
\synoptopt{--stack-to-cone}{transform stack file to cone file}
\synoptopt{--write-binary}{output native binary format}
\synoptopt{--cat}{read and write cat format}
\synoptopt{-cat-max}{<num>}{limit the stack conversion to <num> matrices}
}
\par{
In the two-argument invocation without additional arguments, \mcx{convert}
converts from the format found in the first file to the other format, i.e.
from native interchange to native binary format or the other way around.
When
querying with the \genopt{-q} option, mcx{convert} will output a one-line
synopsis describing the matrix in the argument. The
\genopt{--cone-to-stack} and \genopt{--stack-to-cone} options convert
between the two types of concatenated output provided by \mclcm.
}
\sec{description}{DESCRIPTION}
\par{
The \mcl libraries make extensive use of matrices. Matrices
are used to encode graphs, matrices and clusterings.
They can be stored either in interchange or in binary format. The latter is
somewhat more efficient in storage and much faster in both reading and
writing, but the default is interchange format.
}
\par{
The \mcl input routines recognize the type of storage they are dealing
with. If you want to convert a matrix to the other storage type,
simply specify the file name of the matrix you want to convert.
\mcx{convert} will recognize its type, and write the other type
to the file specified as the second argument.
}
\sec{options}{OPTIONS}
\'begin{itemize}{\mcx_itemopts}
\item{\defopt{--cone-to-stack}{transform cone file to stack file}}
\car{
This option requires two trailing options, the names of respectively the
source cone file and the target stack file.}
\item{\defopt{--stack-to-cone}{transform stack file to cone file}}
\car{
This option requires two trailing options, the names of respectively the
source stack file and the target cone file.}
\item{\defopt{--cat}{read and write cat format}}
\item{\defopt{-cat-max}{<num>}{limit the stack conversion to <num> matrices}}
\item{\defopt{--write-binary}{output native binary format}}
\car{
This option is only useful with either of the options
\genoptref{--cone-to-stack},
\genoptref{--stack-to-cone}, or \genoptref{--cat}.
}
\'end{itemize}
\sec{author}{AUTHOR}
\par{
Stijn van Dongen.
}
\sec{seealso}{SEE ALSO}
\par{
\mysib{mcxio},
and \mysib{mclfamily} for an overview of all the documentation
and the utilities in the mcl family.
}
\"man::postamble"
