On 29 October 2024 at 15:40, Dirk Eddelbuettel wrote: | | Hi Santiago, | | On 29 October 2024 at 21:05, Santiago Vila wrote: | | Package: src:rmpi | | Version: 0.7-2.1-1 | | Severity: serious | | Tags: ftbfs | | | | Dear maintainer: | | | | During a rebuild of all packages in unstable, your package failed to build: | | | | -------------------------------------------------------------------------------- | | [...] | | debian/rules build | | RExtraInstallFlags="--no-test-load" dh build --buildsystem R | | dh_update_autotools_config -O--buildsystem=R | | dh_autoreconf -O--buildsystem=R | | dh_auto_configure -O--buildsystem=R | | dh_auto_build -O--buildsystem=R | | dh_auto_test -O--buildsystem=R | | create-stamp debian/debhelper-build-stamp | | fakeroot debian/rules binary | | RExtraInstallFlags="--no-test-load" dh binary --buildsystem R | | dh_testroot -O--buildsystem=R | | dh_prep -O--buildsystem=R | | dh_auto_install --destdir=debian/r-cran-rmpi/ -O--buildsystem=R | | I: R Package: Rmpi Version: 0.7-2.1 | | I: Building using R version 4.4.1-3 | | I: R API version: r-api-4.0 | | I: Using built-time from d/changelog: Mon, 23 Sep 2024 07:04:44 -0500 | | mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library | | I: Using extra install flags: --no-test-load | | R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean --no-test-load . "--built-timestamp='Mon, 23 Sep 2024 07:04:44 -0500'" | | * installing *source* package ‘Rmpi’ ... | | files ‘configure’, ‘configure.ac’ have the wrong MD5 checksums | | ** using staged installation | | checking for gcc... gcc | | checking whether the C compiler works... yes | | checking for C compiler default output file name... a.out | | checking for suffix of executables... | | checking whether we are cross compiling... no | | checking for suffix of object files... o | | checking whether the compiler supports GNU C... yes | | checking whether gcc accepts -g... yes | | checking for gcc option to enable C11 features... none needed | | checking for pkg-config... /usr/bin/pkg-config | | checking if pkg-config knows about OpenMPI... yes | | checking for orted... no | | configure: error: Cannot find orted. Rmpi needs orted to run. | | This is the crux, and I do not understand it. My last build here (in | September) was still against OpenMPI 4.* and it worked | | checking if pkg-config knows about OpenMPI... yes | checking for orted... yes | | Now we have OpenMPI 5.*, and orted is clearly in /usr/bin/orted but it is not | being found.
I was too fast. In OpenMPI 4.* they exist, in OpenMPI 5.* they are renamed: root@40628efb0bf2:/# dpkg -L openmpi-bin | grep /usr/bin/p /usr/bin/prte /usr/bin/prte_info /usr/bin/prted /usr/bin/prun /usr/bin/pterm.openmpi /usr/bin/prterun root@40628efb0bf2:/# That breaks the package. Will talk to upstream, and maybe our openmpi maintainers too. Cheers, Dirk | The (upstream) autoconf logic is simple: | | if test "$MPITYPE" = "OPENMPI" ; then | AC_CHECK_PROG(ORTED, orted, yes, no) | if test "$ORTED" = no ; then | AC_MSG_ERROR(Cannot find orted. Rmpi needs orted to run.) | fi | fi | | Why would that fail? Any idea? Any other OpenMPI-using packages having issues? | | Dirk | | | ERROR: configuration failed for package ‘Rmpi’ | | * removing ‘/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi’ | | dh_auto_install: error: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean --no-test-load . "--built-timestamp='Mon, 23 Sep 2024 07:04:44 -0500'" returned exit code 1 | | make: *** [debian/rules:7: binary] Error 25 | | dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 | | -------------------------------------------------------------------------------- | | | | The above is just how the build ends and not necessarily the most relevant part. | | If required, the full build log is available here: | | | | https://people.debian.org/~sanvila/build-logs/202410/ | | | | About the archive rebuild: The build was made on virtual machines from AWS, | | using sbuild and a reduced chroot with only build-essential packages. | | | | If you could not reproduce the bug please contact me privately, as I | | am willing to provide ssh access to a virtual machine where the bug is | | fully reproducible. | | | | If this is really a bug in one of the build-depends, please use | | reassign and affects, so that this is still visible in the BTS web | | page for this package. | | | | Thanks. | | -- | dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
