Your message dated Sun, 08 Jun 2025 09:04:24 +0000
with message-id <e1uobx2-004psw...@fasolo.debian.org>
and subject line Bug#1107280: fixed in pymatgen 2025.2.18+dfsg1-5
has caused the Debian Bug report #1107280,
regarding pymatgen: FTBFS: Tries to access Internet during build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1107280: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1107280
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:pymatgen
Version: 2025.2.18+dfsg1-4
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fce1d0e9ba0>
err = TimeoutError('The read operation timed out')
url =
'/wiki/api.php?action=query&list=categorymembers&cmtitle=Category:INCAR_tag&cmlimit=500&format=json'
timeout_value = 60
def _raise_timeout(
self,
err: BaseSSLError | OSError | SocketTimeout,
url: str,
timeout_value: _TYPE_TIMEOUT | None,
) -> None:
"""Is the error actually a timeout? Will raise a ReadTimeout or pass"""
if isinstance(err, SocketTimeout):
raise ReadTimeoutError(
self, url, f"Read timed out. (read timeout={timeout_value})"
) from err
E urllib3.exceptions.ReadTimeoutError:
HTTPSConnectionPool(host='www.vasp.at', port=443): Read timed out. (read
timeout=60)
--------------------------------------------------------------------------------
The reason is in tests/io/vasp/test_help.py which reads like this:
try:
website_down = requests.get("https://www.vasp.at";, timeout=5).status_code
!= 200
except (requests.exceptions.ConnectionError, requests.exceptions.ReadTimeout):
website_down = True
I guess that for the package build as such, we could do this instead of the
above four lines:
website_down = True
and the remaining code would not need to be touched.
But I see in #1103427 that some network tests are deliberately run in CI
so I'm not sure if the above simple fix would be compatible with running
the network tests in CI, so I leave it to you.
Thanks.
--- End Message ---
--- Begin Message ---
Source: pymatgen
Source-Version: 2025.2.18+dfsg1-5
Done: Santiago Vila <sanv...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pymatgen, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1107...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <sanv...@debian.org> (supplier of updated pymatgen package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 08 Jun 2025 10:45:00 +0200
Source: pymatgen
Architecture: source
Version: 2025.2.18+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Santiago Vila <sanv...@debian.org>
Closes: 1106436 1107280
Changes:
pymatgen (2025.2.18+dfsg1-5) unstable; urgency=medium
.
* Team upload.
* Fix build with new uncertainties. Closes: #1106436.
* Do not try to access Internet during build. Closes: #1107280.
* Skip performance tests, as they fail in Salsa CI.
* Change BD from python3-numpy to python3-numpy-dev (lintian error).
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