It *should* work to run: $ autoreconf --force --install --verbose
Except that sqlite doesn't use automake, so autoreconf will fail at the automake step. Instead, better to run each command separately, then you'll need to *manually* add -no-undefined to the lib*.la rules, and (if you're using the current libtool, which you should be) add --tag=CC to the LTCOMPILE and LTLINK variables.
I have packages available at http://cygwin-ports.sourceforge.net/install/release/ if anyone wants to try them. YMMV.
Yaakov
