Re Refmac - I doubt it would unless you gave a specific LINK 26 C - 40 N type L-peptide.. Not sure of the syntax.. Eleanor
On Sat, 25 Jul 2020 at 10:59, Paul Emsley <[email protected]> wrote: > On 24/07/2020 14:42, Yong Tang wrote: > > Dear all, I have a loop truncation that could be explained as > > ProteinName(1-20)-GSSGSS-(40-500), where residues 21-39 was replaced > > with a GSSGSS linker. Now the problem is in Coot, how do I define this > > mutant in a way that I could still preserve the numbering of the > > native residues while allowing the loop to become an integral part of > > the continuous polypeptide chain? > > > I think that you can use residue number 21-26. Coot should do the right > thing with the join between 26 and 40. > > > > > > A related question is then would Refmac handle such a model properly > > in refinement? > > > > I imagine so. > > > Paul. > > ######################################################################## > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > > This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
