Repository: commons-math
Updated Branches:
  refs/heads/MATH_3_X cdfa228e7 -> 98b7057e0


Javadoc fixes.


Project: http://git-wip-us.apache.org/repos/asf/commons-math/repo
Commit: http://git-wip-us.apache.org/repos/asf/commons-math/commit/98b7057e
Tree: http://git-wip-us.apache.org/repos/asf/commons-math/tree/98b7057e
Diff: http://git-wip-us.apache.org/repos/asf/commons-math/diff/98b7057e

Branch: refs/heads/MATH_3_X
Commit: 98b7057e037cc114b67e976fbfbd7745558faaa6
Parents: cdfa228
Author: Phil Steitz <phil.ste...@gmail.com>
Authored: Mon Dec 28 14:00:29 2015 -0700
Committer: Phil Steitz <phil.ste...@gmail.com>
Committed: Mon Dec 28 14:00:29 2015 -0700

----------------------------------------------------------------------
 .../solvers/BracketingNthOrderBrentSolver.java  |  7 +++--
 .../math3/analysis/solvers/BrentSolver.java     | 15 +++++------
 .../FieldBracketingNthOrderBrentSolver.java     |  7 +++--
 .../math3/analysis/solvers/LaguerreSolver.java  | 28 ++++++++++----------
 .../math3/analysis/solvers/MullerSolver.java    |  6 ++---
 .../math3/analysis/solvers/MullerSolver2.java   | 10 +++----
 .../analysis/solvers/UnivariateSolverUtils.java | 24 +++++++++--------
 7 files changed, 48 insertions(+), 49 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/BracketingNthOrderBrentSolver.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/BracketingNthOrderBrentSolver.java
 
b/src/main/java/org/apache/commons/math3/analysis/solvers/BracketingNthOrderBrentSolver.java
index 4981592..956bf9e 100644
--- 
a/src/main/java/org/apache/commons/math3/analysis/solvers/BracketingNthOrderBrentSolver.java
+++ 
b/src/main/java/org/apache/commons/math3/analysis/solvers/BracketingNthOrderBrentSolver.java
@@ -20,8 +20,8 @@ package org.apache.commons.math3.analysis.solvers;
 import org.apache.commons.math3.analysis.UnivariateFunction;
 import org.apache.commons.math3.exception.MathInternalError;
 import org.apache.commons.math3.exception.NoBracketingException;
-import org.apache.commons.math3.exception.NumberIsTooSmallException;
 import org.apache.commons.math3.exception.NumberIsTooLargeException;
+import org.apache.commons.math3.exception.NumberIsTooSmallException;
 import org.apache.commons.math3.exception.TooManyEvaluationsException;
 import org.apache.commons.math3.util.FastMath;
 import org.apache.commons.math3.util.Precision;
@@ -36,9 +36,8 @@ import org.apache.commons.math3.util.Precision;
  *   to user specified {@link AllowedSolution},</li>
  *   <li>the maximal order for the invert polynomial root search is
  *   user-specified instead of being invert quadratic only</li>
- * </ul>
- * </p>
- * The given interval must bracket the root.
+ * </ul><p>
+ * The given interval must bracket the root.</p>
  *
  */
 public class BracketingNthOrderBrentSolver

http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/BrentSolver.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/BrentSolver.java 
b/src/main/java/org/apache/commons/math3/analysis/solvers/BrentSolver.java
index 0cc8750..cf69410 100644
--- a/src/main/java/org/apache/commons/math3/analysis/solvers/BrentSolver.java
+++ b/src/main/java/org/apache/commons/math3/analysis/solvers/BrentSolver.java
@@ -18,8 +18,8 @@ package org.apache.commons.math3.analysis.solvers;
 
 
 import org.apache.commons.math3.exception.NoBracketingException;
-import org.apache.commons.math3.exception.TooManyEvaluationsException;
 import org.apache.commons.math3.exception.NumberIsTooLargeException;
+import org.apache.commons.math3.exception.TooManyEvaluationsException;
 import org.apache.commons.math3.util.FastMath;
 import org.apache.commons.math3.util.Precision;
 
@@ -31,15 +31,14 @@ import org.apache.commons.math3.util.Precision;
  * in the given interval {@code [a, b]} to within a tolerance
  * {@code 2 eps abs(x) + t} where {@code eps} is the relative accuracy and
  * {@code t} is the absolute accuracy.
- * The given interval must bracket the root.
+ * <p>The given interval must bracket the root.</p>
  * <p>
  *  The reference implementation is given in chapter 4 of
  *  <blockquote>
- *   <b>Algorithms for Minimization Without Derivatives</b><br>
- *   <em>Richard P. Brent</em><br>
- *   Dover, 2002<br>
+ *   <b>Algorithms for Minimization Without Derivatives</b>,
+ *   <em>Richard P. Brent</em>,
+ *   Dover, 2002
  *  </blockquote>
- * </p>
  *
  * @see BaseAbstractUnivariateSolver
  */
@@ -138,8 +137,8 @@ public class BrentSolver extends AbstractUnivariateSolver {
      * This implementation is based on the algorithm described at page 58 of
      * the book
      * <blockquote>
-     *  <b>Algorithms for Minimization Without Derivatives</b>
-     *  <it>Richard P. Brent</it>
+     *  <b>Algorithms for Minimization Without Derivatives</b>,
+     *  <it>Richard P. Brent</it>,
      *  Dover 0-486-41998-3
      * </blockquote>
      *

http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/FieldBracketingNthOrderBrentSolver.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/FieldBracketingNthOrderBrentSolver.java
 
b/src/main/java/org/apache/commons/math3/analysis/solvers/FieldBracketingNthOrderBrentSolver.java
index d3f4a2a..f0ca8b9 100644
--- 
a/src/main/java/org/apache/commons/math3/analysis/solvers/FieldBracketingNthOrderBrentSolver.java
+++ 
b/src/main/java/org/apache/commons/math3/analysis/solvers/FieldBracketingNthOrderBrentSolver.java
@@ -36,12 +36,11 @@ import org.apache.commons.math3.util.Precision;
  * The changes with respect to the original Brent algorithm are:
  * <ul>
  *   <li>the returned value is chosen in the current interval according
- *   to user specified {@link AllowedSolution},</li>
+ *   to user specified {@link AllowedSolution}</li>
  *   <li>the maximal order for the invert polynomial root search is
  *   user-specified instead of being invert quadratic only</li>
- * </ul>
- * </p>
- * The given interval must bracket the root.
+ * </ul><p>
+ * The given interval must bracket the root.</p>
  *
  * @param <T> the type of the field elements
  * @since 3.6

http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/LaguerreSolver.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/LaguerreSolver.java 
b/src/main/java/org/apache/commons/math3/analysis/solvers/LaguerreSolver.java
index 9425112..5312dac 100644
--- 
a/src/main/java/org/apache/commons/math3/analysis/solvers/LaguerreSolver.java
+++ 
b/src/main/java/org/apache/commons/math3/analysis/solvers/LaguerreSolver.java
@@ -16,14 +16,14 @@
  */
 package org.apache.commons.math3.analysis.solvers;
 
+import org.apache.commons.math3.analysis.polynomials.PolynomialFunction;
 import org.apache.commons.math3.complex.Complex;
 import org.apache.commons.math3.complex.ComplexUtils;
-import org.apache.commons.math3.analysis.polynomials.PolynomialFunction;
 import org.apache.commons.math3.exception.NoBracketingException;
-import org.apache.commons.math3.exception.NullArgumentException;
 import org.apache.commons.math3.exception.NoDataException;
-import org.apache.commons.math3.exception.TooManyEvaluationsException;
+import org.apache.commons.math3.exception.NullArgumentException;
 import org.apache.commons.math3.exception.NumberIsTooLargeException;
+import org.apache.commons.math3.exception.TooManyEvaluationsException;
 import org.apache.commons.math3.exception.util.LocalizedFormats;
 import org.apache.commons.math3.util.FastMath;
 
@@ -32,8 +32,8 @@ import org.apache.commons.math3.util.FastMath;
  * Laguerre's Method</a> for root finding of real coefficient polynomials.
  * For reference, see
  * <blockquote>
- *  <b>A First Course in Numerical Analysis</b><br>
- *  ISBN 048641454X, chapter 8.<br>
+ *  <b>A First Course in Numerical Analysis</b>,
+ *  ISBN 048641454X, chapter 8.
  * </blockquote>
  * Laguerre's method is global in the sense that it can start with any initial
  * approximation and be able to solve all roots from that point.
@@ -136,7 +136,7 @@ public class LaguerreSolver extends 
AbstractPolynomialSolver {
      * Despite the bracketing condition, the root returned by
      * {@link LaguerreSolver.ComplexSolver#solve(Complex[],Complex)} may
      * not be a real zero inside {@code [min, max]}.
-     * For example, <code>p(x) = x<sup>3</sup> + 1,</code>
+     * For example, <code> p(x) = x<sup>3</sup> + 1, </code>
      * with {@code min = -2}, {@code max = 2}, {@code initial = 0}.
      * When it occurs, this code calls
      * {@link LaguerreSolver.ComplexSolver#solveAll(Complex[],Complex)}
@@ -176,8 +176,8 @@ public class LaguerreSolver extends 
AbstractPolynomialSolver {
     /**
      * Find all complex roots for the polynomial with the given
      * coefficients, starting from the given initial value.
-     * <br/>
-     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.
+     * <p>
+     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.</p>
      *
      * @param coefficients Polynomial coefficients.
      * @param initial Start value.
@@ -200,8 +200,8 @@ public class LaguerreSolver extends 
AbstractPolynomialSolver {
     /**
      * Find all complex roots for the polynomial with the given
      * coefficients, starting from the given initial value.
-     * <br/>
-     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.
+     * <p>
+     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.</p>
      *
      * @param coefficients polynomial coefficients
      * @param initial start value
@@ -231,8 +231,8 @@ public class LaguerreSolver extends 
AbstractPolynomialSolver {
     /**
      * Find a complex root for the polynomial with the given coefficients,
      * starting from the given initial value.
-     * <br/>
-     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.
+     * <p>
+     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.</p>
      *
      * @param coefficients Polynomial coefficients.
      * @param initial Start value.
@@ -255,8 +255,8 @@ public class LaguerreSolver extends 
AbstractPolynomialSolver {
     /**
      * Find a complex root for the polynomial with the given coefficients,
      * starting from the given initial value.
-     * <br/>
-     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.
+     * <p>
+     * Note: This method is not part of the API of {@link 
BaseUnivariateSolver}.</p>
      *
      * @param coefficients polynomial coefficients
      * @param initial start value

http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver.java 
b/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver.java
index 06a7b6b..2e59ed4 100644
--- a/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver.java
+++ b/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver.java
@@ -16,10 +16,10 @@
  */
 package org.apache.commons.math3.analysis.solvers;
 
-import org.apache.commons.math3.util.FastMath;
-import org.apache.commons.math3.exception.NumberIsTooLargeException;
 import org.apache.commons.math3.exception.NoBracketingException;
+import org.apache.commons.math3.exception.NumberIsTooLargeException;
 import org.apache.commons.math3.exception.TooManyEvaluationsException;
+import org.apache.commons.math3.util.FastMath;
 
 /**
  * This class implements the <a 
href="http://mathworld.wolfram.com/MullersMethod.html";>
@@ -30,7 +30,7 @@ import 
org.apache.commons.math3.exception.TooManyEvaluationsException;
  * Muller's method applies to both real and complex functions, but here we
  * restrict ourselves to real functions.
  * This class differs from {@link MullerSolver} in the way it avoids complex
- * operations.</p>
+ * operations.</p><p>
  * Muller's original method would have function evaluation at complex point.
  * Since our f(x) is real, we have to find ways to avoid that. Bracketing
  * condition is one way to go: by requiring bracketing in every iteration,

http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver2.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver2.java 
b/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver2.java
index 2a79c11..864cfd5 100644
--- a/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver2.java
+++ b/src/main/java/org/apache/commons/math3/analysis/solvers/MullerSolver2.java
@@ -30,15 +30,15 @@ import org.apache.commons.math3.util.FastMath;
  * Muller's method applies to both real and complex functions, but here we
  * restrict ourselves to real functions.
  * This class differs from {@link MullerSolver} in the way it avoids complex
- * operations.</p>
+ * operations.</p><p>
  * Except for the initial [min, max], it does not require bracketing
- * condition, e.g. f(x0), f(x1), f(x2) can have the same sign. If complex
- * number arises in the computation, we simply use its modulus as real
+ * condition, e.g. f(x0), f(x1), f(x2) can have the same sign. If a complex
+ * number arises in the computation, we simply use its modulus as a real
  * approximation.</p>
  * <p>
- * Because the interval may not be bracketing, bisection alternative is
+ * Because the interval may not be bracketing, the bisection alternative is
  * not applicable here. However in practice our treatment usually works
- * well, especially near real zeroes where the imaginary part of complex
+ * well, especially near real zeroes where the imaginary part of the complex
  * approximation is often negligible.</p>
  * <p>
  * The formulas here do not use divided differences directly.</p>

http://git-wip-us.apache.org/repos/asf/commons-math/blob/98b7057e/src/main/java/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.java
----------------------------------------------------------------------
diff --git 
a/src/main/java/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.java
 
b/src/main/java/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.java
index b1ecded..71b34c5 100644
--- 
a/src/main/java/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.java
+++ 
b/src/main/java/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.java
@@ -81,8 +81,10 @@ public class UnivariateSolverUtils {
         return solver.solve(Integer.MAX_VALUE, function, x0, x1);
     }
 
-    /** Force a root found by a non-bracketing solver to lie on a specified 
side,
-     * as if the solver was a bracketing one.
+    /**
+     * Force a root found by a non-bracketing solver to lie on a specified 
side,
+     * as if the solver were a bracketing one.
+     *
      * @param maxEval maximal number of new evaluations of the function
      * (evaluations already done for finding the root should have already been 
subtracted
      * from this number)
@@ -173,13 +175,13 @@ public class UnivariateSolverUtils {
      * This method simply calls {@link #bracket(UnivariateFunction, double, 
double, double,
      * double, double, int) bracket(function, initial, lowerBound, upperBound, 
q, r, maximumIterations)}
      * with {@code q} and {@code r} set to 1.0 and {@code maximumIterations} 
set to {@code Integer.MAX_VALUE}.
-     * <strong>Note: </strong> this method can take
-     * <code>Integer.MAX_VALUE</code> iterations to throw a
-     * <code>ConvergenceException.</code>  Unless you are confident that there
-     * is a root between <code>lowerBound</code> and <code>upperBound</code>
-     * near <code>initial,</code> it is better to use
-     * {@link #bracket(UnivariateFunction, double, double, double, double,
-     * double, int) bracket(function, initial, lowerBound, upperBound, q, r, 
maximumIterations)},
+     * <p>
+     * <strong>Note: </strong> this method can take {@code Integer.MAX_VALUE}
+     * iterations to throw a {@code ConvergenceException.}  Unless you are
+     * confident that there is a root between {@code lowerBound} and
+     * {@code upperBound} near {@code initial}, it is better to use
+     * {@link #bracket(UnivariateFunction, double, double, double, 
double,double, int)
+     * bracket(function, initial, lowerBound, upperBound, q, r, 
maximumIterations)},
      * explicitly specifying the maximum number of iterations.</p>
      *
      * @param function Function.
@@ -244,11 +246,11 @@ public class UnivariateSolverUtils {
      * The algorithm stops when one of the following happens: <ul>
      * <li> at least one positive and one negative value have been found --  
success!</li>
      * <li> both endpoints have reached their respective limits -- 
NoBracketingException </li>
-     * <li> {@code maximumIterations} iterations elapse -- 
NoBracketingException </li></ul></p>
+     * <li> {@code maximumIterations} iterations elapse -- 
NoBracketingException </li></ul>
      * <p>
      * If different signs are found at first iteration ({@code k=1}), then the 
returned
      * interval will be \( [a, b] = [l_1, u_1] \). If different signs are 
found at a later
-     * iteration ({code k>1}, then the returned interval will be either
+     * iteration {@code k>1}, then the returned interval will be either
      * \( [a, b] = [l_{k+1}, l_{k}] \) or \( [a, b] = [u_{k}, u_{k+1}] \). A 
root solver called
      * with these parameters will therefore start with the smallest bracketing 
interval known
      * at this step.

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