I can confirm this as well... Same netbook EEE 1000HA.  Regardless of settings 
in system >mouse, synclient reads the same thing.  Even with an xorg file in 
place nothing changes. Not sure if the xorg file is even used anymore 
considering it wasn't there. 
relevant out put of synclient:
    VertEdgeScroll          = 1
    HorizEdgeScroll         = 0
    CornerCoasting          = 0
    VertTwoFingerScroll     = 0

This was after i set two finger scrolling in system>mouse.

-- 
Ubuntu Karmic Regression: No Multi-Touch Touchpad Functionality on Asus Eee PC 
1000HA
https://bugs.launchpad.net/bugs/463735
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which is subscribed to xserver-xorg-input-synaptics in ubuntu.

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