Actually, I was able to "fix" the problem by installing another version of X: I 
added the ppa
http://ppa.launchpad.net/ubuntu-x-swat/xserver-no-backfill/ubuntu
(the corresponding website is 
https://launchpad.net/~ubuntu-x-swat/+archive/xserver-no-backfill)
to my repository and installed the provided x-server. Now the problem doesn't 
happen anymore.

-- 
Delay at maximizing/restoring a window
https://bugs.launchpad.net/bugs/381003
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which is subscribed to fglrx-installer in ubuntu.

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