The problem is fixed by shutlle with the bios version SN68SP0K. 
Shuttle: "... 1. Fixed some DDR2 800 DRAM unstable..."
New Bios Version: http://global.shuttle.com/download03.jsp?PI=883

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Shuttle SN68PTG5 with NVIDIA GeForce 7050PV/nForce 630a Chip
https://bugs.launchpad.net/bugs/158059
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