I have a similar problem

treminal gives
/usr/lib/python2.4/site-packages/apt/__init__.py:17: FutureWarning: apt API not 
stable yet
  warnings.warn("apt API not stable yet", FutureWarning)

gzip: stdin: not in gzip format
extracting '/tmp/tmphe_d6-/edgy.tar.gz'
authenticate '/tmp/tmphe_d6-/edgy.tar.gz' against 
'/tmp/tmphe_d6-/edgy.tar.gz.gpg'

the upgrade tool is downloaded, but during the stage 'Prearing for upgrade' an 
error dialog is shown with the message
Failed to fetch 
http://gb.archive.ubuntu.com/ubuntu/dists/dapper-updates/main/binary-i386/Packages.gz
 Sub-process gzip returned an error code (1)

Nick

-- 
upgrade from 6.06 failed with 'can not access archive'
https://launchpad.net/bugs/67066

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