Received a note back from upstream:

hurm, some of what that script does can be done simply with
configuration changes in the existing .properties files. The only thing
I saw which can't is to override awt.toolkit which has to be done via an
environment variable (if I read the source right). But for some of the
kinds of KDE tweaks you'd want, it's best to work with the AWT team to
implement it in AWT. e.g. KDE probably sets it's system wide properties
differently than on GNOME and it'd be possible to detect you're in KDE
rather than GNOME and query properly for that. I'm going to close this
in jdk-distros as will not fix because this isn't a jdk-distros issue.
The issue should be redirected to bugs.sun.com or taken to openjdk
mailing lists.

Did some checking on the bugs.sun.com site and found this:
http://bugs.sun.com/view_bug.do?bug_id=6536584

Appears there is some work to be done on the Java side to make this
happen.

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Java 6 and KDE integration
https://bugs.launchpad.net/bugs/99445
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