Since a technical solution is likely not possible (as described above), just 
make the error message a little more practical.  While the message provided is 
perfectly accurate, a clearer message might make users less jumpy when it 
'breaks.'  Something along the lines of:
if (kernel_modules_version < virtualbox-ose-modules_version) than
errormsg="kernel headers do not match virtualbox modules.  Reboot and start 
with previous kernel or see the forums for the latest virtualbox modules"

-- 
virtualbox don't run when update-manager change the linux-kernel
https://bugs.launchpad.net/bugs/237278
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