That would be a bug. But your initial report is very unclear and vague - in 
most cases your problems have nothing to do with different distros as such but 
with the different versions of packages installed in the various distros. E.g., 
you use application X as version 1.0 in distro A, then switch to distro B that 
uses X in version 2.0, the config files will be updated (and maybe moved, 
renamed, ...) to fit the new specifications of version 2.0. When logging back 
to A, version 1.0 doesn't know how to handle the new config files. So your bug 
report amounts to being able to use different versions of a software for the 
same user (with the same home dir). 
Regarding the question of "bug report or something to discuss": I do not see at 
what point a developer could do changes so that your bug would be corrected. If 
all programs would follow the freedesktop specification 
http://standards.freedesktop.org/basedir-spec/basedir-spec-latest.html than it 
would be maybe possible to set $XDG_CONFIG_HOME and $XDG_DATA_HOME to something 
like $HOME/.ubuntu/... instead of the default locations. However, several 
programs don't yet use it and would save the configuration files to the home 
directory anyway. What you *could* do however is filing a bug report against a 
particular software package that doesn't handle storing and loading config 
files as you want it to. 

I hope it's now clearer why I invalidated the bug. Your suggestion (in
the general, Ubuntu-wide way) would require a lot of changes to a lot of
packages and is therefore not handled well by a bug report - discussing
it on mailing lists or using something like Ubuntu brainstorm [WWW]
http://brainstorm.ubuntu.com/ would be a much better option.

-- 
different version conf files in home
https://bugs.launchpad.net/bugs/231557
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