Curiouser and curiouser...

I tried remove mdadm, lvm-common and lvm2.  They rebooted and hooray,
the wait is gone.  They, in attempting to isolate where the problem was,
I addeded them back one by one.  Eventually, I had reinstalled all three
packages, and the wait had still not come back.  Something in the
install/uninstall process I suppose?

To answer the rest of your questions -- the devices are /dev/hda
(internal IDE) and /dev/sda (external USB), although the USB drive is
not normally turned on at boot.

The root device is specified to grub by UUID, I haven't tried changing
this since the system appears to have unbroken itself anyway.

-- 
Using UUID in /etc/fstab causes long delay on boot
https://launchpad.net/bugs/66170

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