ntpdate should not hold on to the port after it's completed updating the
clock, so starting ntpdate before ntpd should not be a problem as long
as ntpdate has completed its update. If it is, then we have a buggy
ntpdate. I have seen other Linux distributions do this with no problems
at all in getting ntpdate/ntpd to coexist. In fact, since ntpd may
refuse to synchronize the clock if it's very far off the network time,
it is a good idea to use ntpdate to "preset" the clock before starting
ntpd. The man page for ntpdate actually recommends this:

"ntpdate can  be run manually as necessary to set the host clock, or it
can be run from the host startup script to set the clock at boot  time.
This is useful in some cases to set the clock initially before starting
the NTP daemon ntpd."

It appears that maybe there's a parallel startup problem happening,
where the ntpdate isn't given time to complete its work before ntpd
starts up, or there may be a bug in the version of ntpdate in Ubuntu.

-- 
Ntp doesn't synchronise on startup in Gutsy
https://bugs.launchpad.net/bugs/158110
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