Ok. I should have checked my old modified Compose file. It seems that
hardy has

/usr/share/X11/xkb/symbols/gr:

key <AC10> { [ dead_acute, dead_horn ] };
key <AC11> { [ dead_grave, dead_ogonek ] };

which I changed to

key <AC10> { [ dead_acute, U0313 ] };
key <AC11> { [ dead_grave, U0314 ] };

and in /usr/share/locale/en_US.UTF-8

has U10000313's and 010000314's  instead of U0313 or U0314. I changed
U1000313's and U1000314 to U0314 and got polytonic input working
correctly. Let's see how the upgrades in x.org ja gtk have progressed in
hardy+1

-- 
xkb greek polytonic: cannot write psili and dasia after upgrade to breezy
https://bugs.launchpad.net/bugs/21637
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