I also have the issue after upgrading to Hardy Heron Beta.
I'm using the "mouse" driver

Section "InputDevice"
        Identifier      "Configured Mouse"
        Driver          "mouse"
        Option         "Protocol"        "auto"
        Option         "Device"          "/dev/psaux"
        Option         "Emulate3Buttons" "no"
        Option         "ZAxisMapping"    "4 5"
        Option         "Buttons"         "3"

EndSection

No update so far has fixed this problem. 
I've been using BTNX but uninstalled just to make sure it didn't cause the 
trouble.

-- 
After update to Hardy Heron Alpha 5 leftclicks count as doubleclicks
https://bugs.launchpad.net/bugs/195143
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