I have seen this bug too. It only happens in some specific state with
regards to the # of torrents running, if the Transmission window is
active, minimized, or trayed, etc. I don't have suggestions for figuring
out exactly why it happens but it certainly does happen.
** Changed in: transmission (Ubuntu)
Status: Incomplete => Confirmed
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Transmission doesn't open torrents via Firefox 3
https://bugs.launchpad.net/bugs/204184
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