Are you running compiz? Do you see any error messages on the console? I
get some blank windows with compiz & nvidia, and have encountered
problems with intel. Try using '-defaultvisual' option for mathematica
to see if it helps.

** Changed in: xorg (Ubuntu)
       Status: New => Incomplete

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Unable to input text to mathematica 6.0.1 in Hardy (regression from Gutsy)
https://bugs.launchpad.net/bugs/197163
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