I am pretty sure that this bug has something to do with Bug #131646 and of 
course Bug #130933.
You can test it through disabling compiz System - Preferences - Appearance - 
Desktop Effects - None and then restart X. After that the panel should be fine.
Btw. please post the output of xrandr.

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GNOME panels are smaller than detected and set resolution
https://bugs.launchpad.net/bugs/152416
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