I have this same problem. It is painfully slow and will occasionally
crash after an upgrade.

It loads slow.
Packages take too long to mark.
The finding and selecting dependencies takes a while.
Search seemingly takes forever. 
It crashed occasionally, seemingly when updating after an upgrade.

It is considerably slower than it was in Dapper. It hurts to use it.

-- 
Synaptic too slow
https://launchpad.net/bugs/63171

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