Marco, I tested it by replacing docking.js with the version you
suggested.

Unfortunately, the issue still occurs with approximately the same
frequency.

So, in my case, this revision of docking.js does not appear to resolve
the issue.

I also noticed another symptom when the bug occurs: after launching an
application, the icon appears in Ubuntu Dock only after about 20
seconds, and after closing the application it disappears after about 20
seconds as well. When the bug does not occur, the Dock updates
immediately. This happens with both version of docking.js

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https://bugs.launchpad.net/bugs/2159789

Title:
  Intermittent empty Applications Grid on login (GNOME Shell 50.1,
  Ubuntu 26.04, Wayland)

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